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JAL-3829 use sequence dependent constructor for structure chooser query engine testing
[jalview.git] / src /
2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint tree | commitdiff
2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initial... tree | commitdiff
2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query... tree | commitdiff
2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implement... tree | commitdiff
2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct... tree | commitdiff
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... tree | commitdiff
2021-09-02 gmungocJAL-1842 adjust code to match changed semantics of... tree | commitdiff
2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code tree | commitdiff
2021-09-02 gmungocJAL-1842 remove redundant call to FeatureRenderer.featu... tree | commitdiff
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan... tree | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... tree | commitdiff
2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism... tree | commitdiff
2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and... tree | commitdiff
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval... tree | commitdiff
2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitio... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestC... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core tree | commitdiff
2021-08-30 arngucciJAL-3829_spike minor changes tree | commitdiff
2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters tree | commitdiff
2021-08-30 arngucciMerge branch 'arnaud/develop' into arnaud/JAL-3929_spik... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy tree | commitdiff
2021-07-27 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 suppress NPE when trying to retrieve SIFTS... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 ALPHAFOLD database source based on the PDB... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 check for existence of an alpha fold model... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 convenience method to check a URL will return... tree | commitdiff
2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_2 tree | commitdiff
2021-06-09 Jim Procterfixes JAL-3840 tree | commitdiff
2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows tree | commitdiff
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more... tree | commitdiff
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... tree | commitdiff
2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code... tree | commitdiff
2021-04-06 arngucciJAL-3829 more testing wit tdbeacons data columns and... arnaud/develop tree | commitdiff
2021-04-01 ArnaldoJAL-3829 attempt to fix my changes to follow the Jira... tree | commitdiff
2021-03-29 Arnaldofixed last commit tree | commitdiff
2021-03-29 ArnaldoRequest now parses the whole structures, need to fix... tree | commitdiff
2021-03-25 ArnaldoTDB.executeRequest fix & test passed tree | commitdiff
2021-03-25 ArnaldoCreated 3Dbeacons data_columns.txt Test passed for... tree | commitdiff
2021-03-15 Arnaldoadded untracked parsing attempts files tree | commitdiff
2021-03-15 ArnaldoAdding tests for 3DB, currently 2/4 corrects on PanelTest tree | commitdiff
2021-03-05 Ben SoaresJAL-3618 Enable appBundleIsTraversable in JFileChooser... tree | commitdiff
2021-03-04 Ben SoaresJAL-3594 Allow a channel to use a different preferences... tree | commitdiff
2021-03-02 ArnaldoFirst commit of 3DB FTS Panel & Restclient tree | commitdiff
2021-02-18 gmungocJAL-3822 pass panel height and width to wrapped geometr... tree | commitdiff
2021-02-18 gmungocJAL-2422 remove temporary patch (requires ChimeraX... tree | commitdiff
2021-02-10 Ben SoaresJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas... tree | commitdiff
2021-02-04 gmungocJAL-2422 a fix and a fudge for two failing ChimeraX... tree | commitdiff
2021-01-21 gmungocJAL-3038 corrected code that reads editable JComboBox... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Fixed the version checking URL formulation... Develop-2_11_2_0-d20201215 tree | commitdiff
2020-12-14 Ben SoaresJAL-3594 Allow setting of getdownappbase and getdowndis... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Test for remote release build_properties file... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 fixes after CR-JAL-241. Now only checking... tree | commitdiff
2020-12-14 Ben SoaresJAL-3280 Pass appbase and appdir from getdown to jalvew... tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Defintely want SplashScreen to appear in the... tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... tree | commitdiff
2020-12-11 Ben SoaresJAL-3775 JAL-3633 Make java.net.Authenticator code... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 Images for splash screen tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-08 Ben SoaresJAL-3594 Change main window title tree | commitdiff
2020-12-07 Ben SoaresJAL-3594 added BG logo. Changed some named Jalviews... tree | commitdiff
2020-12-05 Ben SoaresJAL-3594 Default values for channel properties defined... tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 Added rotating logo png tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting tree | commitdiff
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Refactoring a bit of jalview.bin... tree | commitdiff
2020-12-01 Ben SoaresJAL-3660 Fix for specified output format when using... tree | commitdiff
2020-12-01 Ben SoaresJAL-3530 Added a -nowebservicediscovery command line... tree | commitdiff
2020-11-27 Ben SoaresJAL-3660 Fix for specified output format when using... tree | commitdiff
2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to... tree | commitdiff
2020-11-13 Ben SoaresJAL-3757 JAL-3689 Fixed checks for URLs by adding check... tree | commitdiff
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 last minute refinement so password box doesn... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... tree | commitdiff
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Preferences for Proxy Authentication... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 label.proxy_server -> label.proxy_servers tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls tree | commitdiff
2020-11-12 Ben SoaresJAL-3628 Error when saving alert box has been moved... tree | commitdiff
2020-11-12 Ben SoaresJAL-3676 More explicit tooltip about resetting log... tree | commitdiff
2020-11-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for... tree | commitdiff
2020-11-10 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error... tree | commitdiff
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