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JAL-2629 prevent hmmbuild from running if there are no sequences
[jalview.git] / src /
2017-08-15 TZVanaaltenJAL-2629 prevent hmmbuild from running if there are... tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 configure file chooser to select either a... tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 add checks for executing hmmer commands as... tree | commitdiff
2017-08-15 tzvanaaltenJAL-2629 fix file loading issues on Mac tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 add HMMER version check tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 selected HMM name now shown in HMMER menu tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 exported HMMs are now named correctly tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 fix uniquified sequence names appearing when... tree | commitdiff
2017-08-15 TZVanaaltenJAL-2599 fix HMMER scheme not colouring inserts and... tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 the HMMER tab is now disabled when HMMER is... tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 remove annotation when exporting for hmmbuild tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 remove gap padding, and now has option to... tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 add insert sequence at method on alignment tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 fix expected length error for hmmbuild by... tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 add padding for .sto annotations to fix issues... tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 remove redundant options from HMMER menu tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 add validation for HMMER path tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 fix incorrect gap insertions on HMM sequence tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 fix issue where trim termini setting would... tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 hmmalign can now be run from the sequence... tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 add force alphabet type for HMMER commands tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 fix issue where HMM sequences would be too... tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 add HMMER tab in preferences menu tree | commitdiff
2017-08-11 TZVanaaltenJAL-2629 delete unnecessary buffer files for hmmer... tree | commitdiff
2017-08-11 TZVanaaltenJAL-2629 add ability to build a HMM from a group tree | commitdiff
2017-08-11 TZVanaaltenJAL-2629 add ability to select HMMs tree | commitdiff
2017-08-11 TZVanaaltenJAL-2599 HMMs can now be dropped onto the desktop tree | commitdiff
2017-08-10 TZVanaaltenJAL-2629 hmmalign now correctly creates a new frame tree | commitdiff
2017-08-10 tzvanaaltenMerge branch 'features/hmmer' of https://source.jalview... tree | commitdiff
2017-08-10 tzvanaaltenJAL-2629 fix files permission issue on Mac tree | commitdiff
2017-08-09 TZVanaaltenJAL-2599 fix for issue where info annot would not display tree | commitdiff
2017-08-09 tzvanaaltenJAL-2599 fix for issue where info annot would not display tree | commitdiff
2017-08-09 TZVanaaltenJAL-2629 buffers are now temporary files tree | commitdiff
2017-08-09 TZVanaaltenJAL-2629 removed unnecessary exception throws from... tree | commitdiff
2017-08-08 TZVanaaltenJAL-2616 fix allowing clan sorting to work tree | commitdiff
2017-08-08 TZVanaaltenJAL-2599 fix for index issue on node lookup tree | commitdiff
2017-08-08 TZVanaaltenJAL-2629 add ability to select hmmer binaries folder tree | commitdiff
2017-08-07 TZVanaaltenJAL-2629 fixed hmmalign failing due to differing sequen... tree | commitdiff
2017-08-07 TZVanaaltenJAL-2629 current hmmer commands are now executed in... tree | commitdiff
2017-08-04 TZVanaaltenJAL-2599 fixed information annotation buttons not working tree | commitdiff
2017-08-04 TZVanaaltenJAL-2629 hmmbuild now runs on alignments of different... tree | commitdiff
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment tree | commitdiff
2017-08-02 TZVanaaltenJAL-2599 fix for HMM logo not normalising correctly tree | commitdiff
2017-08-02 TZVanaaltenJAL-2599 fix issue where parser exported map annotation... tree | commitdiff
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons tree | commitdiff
2017-07-31 TZVanaaltenJAL-2629 add hmmalign command tree | commitdiff
2017-07-27 TZVanaaltenJAL-2629 implement hmmbuild tree | commitdiff
2017-07-27 TZVanaaltenJAL-2629 moved HMM storage location to placeholder... tree | commitdiff
2017-07-26 TZVanaaltenJAL-2629 HMMs now map to reference annotation if exists tree | commitdiff
2017-07-25 TZVanaaltenJAL-2629 add non-functional HMMER menu tree | commitdiff
2017-07-25 TZVanaaltenJAL-2616 add ability to perform random alignments withi... tree | commitdiff
2017-07-24 tzvanaaltenJAL-2616 add placeholder sequence for HMM, does not... tree | commitdiff
2017-07-24 tzvanaaltenJAL-2616 add ability to change location of family and... tree | commitdiff
2017-07-24 tzvanaaltenJAL-2599 .hmm parser should now accept older .hmm files tree | commitdiff
2017-07-21 TZVanaaltenJAL-2616 add ability to sort Pfam families and HMMs... tree | commitdiff
2017-07-20 TZVanaaltenJAL-2616 remove statistical analysis from AlignFrame tree | commitdiff
2017-07-20 TZVanaaltenJAL-2599 small code improvements tree | commitdiff
2017-07-20 TZVanaaltenJAL-2616 add documentation for probability analyser tree | commitdiff
2017-07-20 TZVanaaltenJAL-2616 add probability distribution analyser class tree | commitdiff
2017-07-20 TZVanaaltenJAL-2599 add ability to process RNA HMMer files tree | commitdiff
2017-07-18 TZVanaaltenJAL-2599 complete documentation for HMM and HMMFile... tree | commitdiff
2017-07-18 TZVanaaltenJAL-2599 modified state transition probability storage tree | commitdiff
2017-07-14 TZVanaaltenadd partial button fix to annotation and statistics... features/hmmer_statistics tree | commitdiff
2017-07-12 TZVanaaltentest HMM annotaTION tree | commitdiff
2017-07-11 TZVanaaltencomplete Information Content annotation tree | commitdiff
2017-06-29 TZVanaaltenadd information content calculations tree | commitdiff
2017-06-29 TZVanaaltentransferred the storage position of the HMM to annotations tree | commitdiff
2017-06-23 TZVanaaltentest HMMER colour scheme tree | commitdiff
2017-06-23 TZVanaaltenadd HMMER colour scheme tree | commitdiff
2017-06-22 TZVanaaltenfully integrate HMMER3 file format into Jalview tree | commitdiff
2017-06-20 TZVanaaltenrestructure file exporter tree | commitdiff
2017-06-15 TZVanaaltenadd HMMFile class to read and write HMM files tree | commitdiff
2017-06-15 TZVanaaltenUpdate HiddenMarkovModel class tree | commitdiff
2017-06-09 TZVanaaltenAdd HiddenMarkovModel class tree | commitdiff
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop tree | commitdiff
2017-05-31 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly tree | commitdiff
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571 tree | commitdiff
2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by... tree | commitdiff
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to... tree | commitdiff
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-29 Jim ProcterJAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2536' into develop tree | commitdiff
2017-05-29 Jim ProcterJAL-2536 tweak javadoc wording tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2517cancelAppletColour' into... tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2547tooltipOnGap' into develop tree | commitdiff
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus... tree | commitdiff
2017-05-27 Jim ProcterJAL-2562 javadoc TODO tree | commitdiff
2017-05-26 kiramtJAL-2491 Missed port to applet from JAL-1691 bug/JAL-2491 tree | commitdiff
2017-05-26 tcofoegbuJAL-2465 Improvement to re-instate storing recently... tree | commitdiff
2017-05-26 tcofoegbuJAL-2465 fix to prevent files loaded from the system... tree | commitdiff
2017-05-25 kiramtJAl-2034 Ported to applet bug/JAL-2034contextchange tree | commitdiff
2017-05-25 kiramtJAL-2034 don't update overview after click without... tree | commitdiff
2017-05-25 kiramtMerge branch 'bug/JAL-2551' into bug/JAL-2034contextchange tree | commitdiff
2017-05-24 kiramtJAL-2551 Fix to group colouring when group extent is... bug/JAL-2551 tree | commitdiff
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup tree | commitdiff
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