git://source.jalview.org / jalview.git / history
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branch_i18n
[jalview.git] / src /
2014-06-04 Jim ProcterJAL-1355 key typo tree | commitdiff
2014-06-03 Jim ProcterJAL-690 jvp rather than jar for save/restore state... tree | commitdiff
2014-06-03 Jim ProcterJAL-690 JAL-1503 update file types/extensions in Jalvie... tree | commitdiff
2014-06-03 Jim ProcterJAL-1473 exclude score models not compatible with PCA... tree | commitdiff
2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype tree | commitdiff
2014-06-03 Jim ProcterJAL-1512 comment out for 2.8.1 release tree | commitdiff
2014-06-03 Jim ProcterJAL-1512 fix calculation once again and include score... tree | commitdiff
2014-06-03 Jim ProcterJAL-1473 make it easier to generate HTML documentation... tree | commitdiff
2014-06-02 Jim ProcterJAL-1512 rejig buggy conservation-basesd score matrix... tree | commitdiff
2014-05-28 Jim ProcterJAL-1507 bugfix tree | commitdiff
2014-05-27 Jim ProcterJAL-1507 added loop to throw dummy javascript calls... tree | commitdiff
2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label... tree | commitdiff
2014-05-27 Jim ProcterJAL-1508 make default font size 11pt for embedded menus... tree | commitdiff
2014-05-23 Jim ProcterJAL-1445 extend functionality to select or toggle selec... tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-05-13 Jim ProcterJAL-1239 cancelled flag should be checked and counted tree | commitdiff
2014-05-13 Jim ProcterJAL-1239 make doubly sure sub job status is set to... tree | commitdiff
2014-05-12 Jim ProcterJAL-1397 catch other random version strings tree | commitdiff
2014-05-12 Jim Procterpatch for regression introduced JAL-1397 tree | commitdiff
2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colour... tree | commitdiff
2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct... tree | commitdiff
2014-05-02 Jim Procterformatting tree | commitdiff
2014-05-02 Jim ProcterJAL-1233 JAL-1066 fix for JAL-1397 test: allow per... tree | commitdiff
2014-05-01 Jim Procterremove todo tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs tree | commitdiff
2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to... tree | commitdiff
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on... tree | commitdiff
2014-05-01 Jim Procterjavadoc tree | commitdiff
2014-05-01 Jim ProcterJAL-1497 check to see if tree structure is ready for... tree | commitdiff
2014-05-01 Jim Procterfix for JAL-1495 - initialise menu entry from current... tree | commitdiff
2014-05-01 Jim Procterfix for JAL-1494 tweaked logic to fix NPEs and modify... tree | commitdiff
2014-05-01 Jim ProcterJAL-969 remove unnecessary overrides tree | commitdiff
2014-05-01 Jim ProcterJAL-961 configure conservation worker from alignment... tree | commitdiff
2014-05-01 Jim ProcterJAL-961 store result of conservation analysis worker... tree | commitdiff
2014-05-01 Jim Proctermake sure valid value for non-gapped calculation with... tree | commitdiff
2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow... tree | commitdiff
2014-04-28 Jim ProcterJAL-1340 mark redundant sequences as soon as redundancy... tree | commitdiff
2014-04-28 Jim ProcterJAL-1340 simpler and more efficient interactive highlig... tree | commitdiff
2014-04-28 Jim ProcterJAL-1340 ensure slider value wide enough to see three... tree | commitdiff
2014-04-27 Jim ProcterJAL-1322 avoid rounding error causing non functional... tree | commitdiff
2014-04-27 Jim ProcterJAL-1322 allow slider to reach maximum value for parameter tree | commitdiff
2014-04-27 Jim ProcterJAL-1322 only update slider when return is pressed tree | commitdiff
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into Release_2_8_1_Branch tree | commitdiff
2014-04-27 Jim Procterworkaround for JAL-1319 - catch unexpected NPE thrown... tree | commitdiff
2014-04-27 Jim ProcterJAL-1164 (regression) reinstate 'apply disorder predict... tree | commitdiff
2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list... tree | commitdiff
2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices' tree | commitdiff
2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colourin... tree | commitdiff
2014-04-25 Jim Procterfix for JAL-1268 tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset... tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 patches to loader to cope with dataset only... tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 new flag to write a dataset only jalview XML... tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 allow jalview alignments to be saved that... tree | commitdiff
2014-04-25 Jim ProcterJAL-1177 propagate sequence associated annotation to... tree | commitdiff
2014-04-24 Jim ProcterJAL-1232 fix - ensure display all columns flag is set... tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... tree | commitdiff
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8... tree | commitdiff
2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release tree | commitdiff
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation tree | commitdiff
2014-04-21 Jim ProcterJAL-1355 keys for colours tree | commitdiff
2014-04-21 Jim Procterfix for JAL-1438 tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 define defaults for DNA/Protein PCA calculation tree | commitdiff
2014-04-21 Jim ProcterJAL-1485 JAL-1483 show i18n key for different available... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 JAL-1355 i18n for score model submenu tree | commitdiff
2014-04-21 Jim ProcterJAL-1485 JAL-1473 use compound i18n messages to constru... tree | commitdiff
2014-04-21 Jim ProcterJAL-1485 tree | commitdiff
2014-04-21 Jim ProcterJAL-1484 always update the dataset sequence if 'trimDat... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 don't include empty columns if no upstream... tree | commitdiff
2014-04-21 Jim ProcterJAL-1355 JAL-1466 i18n for flanking sequence menu entry... tree | commitdiff
2014-04-21 Jim ProcterJAL-741 (poss related JAL-971) - fix NPE raised when... tree | commitdiff
2014-04-21 Jim ProcterJAL-1476 JAL-1016 avoid NPE messiness if structures... tree | commitdiff
2014-04-21 Jim Procterdon't unhook existing group associated annotation JAL... tree | commitdiff
2014-04-21 Jim Procterfix for JAL-1478 tree | commitdiff
2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when... tree | commitdiff
2014-04-21 Jim ProcterJAL-1477 first implementation of 'View all representati... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 import full length sequence to dataset sequenc... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 improved test and patched off by one that... tree | commitdiff
2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the... tree | commitdiff
2014-04-21 Jim Proctertidy imports tree | commitdiff
2014-04-21 Jim Procterpatch v2 for JAL-1474 add the newly recovered dataset... tree | commitdiff
2014-04-21 Jim Procterpatch v1 for JAL-1474 - make sure we actually set the... tree | commitdiff
2014-04-21 Jim ProcterJAL-1474 note about buggy 'merge sequence' operation... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 tree calcs performed with ScoreModelI instances tree | commitdiff
2014-04-21 Jim Procterdon't finness the alignment annotation modification... tree | commitdiff
2014-04-21 Jim Procterpatch for JAL-1465 - set min/max thresholds for each... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 menu entries for different score models availa... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 provide Amino acid physicochemical conservatio... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 show available score matrices for use in PCA... tree | commitdiff
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calcula... tree | commitdiff
2014-04-06 Jim Procterfix for JAL-1464 avoid NPE with per-sequence annotation... tree | commitdiff
2014-04-05 Jim ProcterMerge branch 'r281_JAL-1211' into Release_2_8_1_Branch tree | commitdiff
2014-04-04 Jim ProcterJAL-1211 - set annotation panel height according to... tree | commitdiff
2014-04-04 Jim ProcterJAL-1211 - pick up site-defined defined window geometry... tree | commitdiff
2014-04-04 Jim Procterfix for JAL-1461 - check that filetype setting in brows... tree | commitdiff
2014-04-04 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2... tree | commitdiff
2014-04-04 Jim ProcterJAL-1335 typo and 'edit' action tree | commitdiff
next