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JAL-2335 patched FeatureRendererModel.findFeaturesAtRes to honour isContactFeature
[jalview.git] / src /
2016-11-21 Jim ProcterJAL-2335 patched FeatureRendererModel.findFeaturesAtRes... bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-21 gmungocJAL-2333 corrected select columns with 'contact' feature tree | commitdiff
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-18 gmungocJAL-98 with the two types missing from last commit... bug/JAL-98consensusMemory tree | commitdiff
2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array... tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-17 gmungocJAL-98 javadoc, third party acknowledgements (and very... tree | commitdiff
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature... tree | commitdiff
2016-11-17 gmungocJAL-2327 add isContactFeature tree | commitdiff
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into... tree | commitdiff
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... tree | commitdiff
2016-11-16 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-16 tcofoegbuJAL-2322 JAL-2309 replaced references to isheadless... tree | commitdiff
2016-11-16 gmungocJAL-2324 fix and tests for comparison of Float.NaN... tree | commitdiff
2016-11-16 gmungocJAL-2319 corrected reporting of SIFTS mapping tree | commitdiff
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... tree | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... tree | commitdiff
2016-11-10 tcofoegbuMerge branch 'develop' into bug/JAL-2317_jmol_chimera... tree | commitdiff
2016-11-10 tcofoegbuJAL-2317 Fixed Chimera command for hiding/showing disti... bug/JAL-2317_jmol_chimera-chain-factorisation tree | commitdiff
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... tree | commitdiff
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 updated method calls tree | commitdiff
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... tree | commitdiff
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown tree | commitdiff
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ... tree | commitdiff
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... tree | commitdiff
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... tree | commitdiff
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-04 kiramtJAL-2282 Better check for existing url links tree | commitdiff
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent! tree | commitdiff
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet tree | commitdiff
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;... tree | commitdiff
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links tree | commitdiff
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked... tree | commitdiff
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... tree | commitdiff
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link... tree | commitdiff
2016-11-02 kiramtJAL-2282 Refactor applet too tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence... tree | commitdiff
2016-11-02 kiramtJAL-2282 Code tidy tree | commitdiff
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... tree | commitdiff
2016-11-02 kiramtJAL-2282 URLLink unit tests updated tree | commitdiff
2016-11-01 gmungocConservation now using ResidueCount; tests added tree | commitdiff
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... tree | commitdiff
2016-11-01 gmungocJAL-98 typo in javadoc tree | commitdiff
2016-11-01 gmungocJAL-98 simplified repeat() method tree | commitdiff
2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac... tree | commitdiff
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink tree | commitdiff
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code tree | commitdiff
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases... tree | commitdiff
2016-10-31 gmungocJAL-98 round when formatting dec places tree | commitdiff
2016-10-31 gmungocJAL-1723 ellipsis in tooltip if xrefs to more than... tree | commitdiff
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR... tree | commitdiff
2016-10-31 kiramtForce double-clicking to use sequence_id cases and... tree | commitdiff
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC... tree | commitdiff
2016-10-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association... tree | commitdiff
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils tree | commitdiff
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box tree | commitdiff
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog tree | commitdiff
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop tree | commitdiff
2016-10-26 gmungocJAL-2286 modal residue check + commenting tree | commitdiff
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has... tree | commitdiff
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold... tree | commitdiff
2016-10-26 tcofoegbuMerge branch 'features/JAL-2284_export-biojsmsa-via... tree | commitdiff
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli tree | commitdiff
2016-10-25 gmungocJAL-2286 use constant for fixed colours tree | commitdiff
2016-10-25 gmungocJAL-98 javadoc corrected tree | commitdiff
2016-10-25 gmungocJAL-98 javadoc added tree | commitdiff
2016-10-25 gmungocJAL-98 minor fixes to / tests for annotation derivation tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-25 tcofoegbuMerge branch 'bug/JAL-2277_html-output-wrapped-mode... tree | commitdiff
2016-10-25 tcofoegbuJAL-2277 Improvement to support html+svg export in... bug/JAL-2277_html-output-wrapped-mode tree | commitdiff
2016-10-25 gmungocJAL-98 field comments updated tree | commitdiff
2016-10-25 gmungocJAL-98 small efficiency fix + commenting tree | commitdiff
2016-10-25 gmungocJAL-98 javadoc / comments updated tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 gmungocJAL-98 fixme comment removed - nothing to do tree | commitdiff
2016-10-24 gmungocJAL-98 ResidueCount 100% test coverage (and bug fixes!) tree | commitdiff
2016-10-24 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282 tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'bug/JAL-2272cmdClickGroupEdit' into develop tree | commitdiff
2016-10-24 gmungocJAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl... bug/JAL-2272cmdClickGroupEdit tree | commitdiff
2016-10-24 kiramtFixed dialog box messages in English and Spanish. Adjus... tree | commitdiff
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-24 kiramtCorrect Preferences to check for SEQUENCE_NAME as well... tree | commitdiff
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