Merge branch 'bug/JAL-2665-2.10.2b' into documentation/JAL-2675_release2102b1
[jalview.git] / src /
2017-09-03 Jim ProcterMerge branch 'bug/JAL-2665-2.10.2b' into documentation... bug/JAL-2673_mergewithproblem
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2527' into documentation...
2017-09-03 Jim ProcterMerge branch 'features/JAL-2681_duplicatecrossrefs...
2017-08-31 kiramtJAL-2527 Updated Spanish, adjusted UI so Spanish fits
2017-08-31 kiramtJAL-2527 Updates following code review
2017-08-30 kiramtJAL-2527 Code comments, tidy
2017-08-30 kiramtJAL-2527 Added default setting/resetting and first...
2017-08-30 kiramtJAL-2527 Wired up cached values to overview
2017-08-30 kiramtMerge remote-tracking branch 'origin/feature/2588'...
2017-08-30 kiramtMerge branch 'feature/JAL-2664' into feature/JAL-2527
2017-08-29 kiramtJAL-2664 Updates following review feature/JAL-2664
2017-08-29 kiramtJAL-2527 Added overview prefs - don't get picked up...
2017-08-29 kiramtJAL-2665 OOM checks just in case bug/JAL-2665-2.10.2b
2017-08-29 kiramtJAL-2665 Corrected to draw selections for wrapped printing
2017-08-28 kiramtJAL-2527 Started adding overview preferences
2017-08-28 kiramtMerge remote-tracking branch 'origin/releases/Release_2...
2017-08-28 kiramtJAL-2665 Changes for review comments; printing with... bug/JAL-2665
2017-08-23 gmungocJAL-2435 last lost commit e926a5d redone
2017-08-22 Jim ProcterJAL-1551 formatting
2017-08-22 Jim ProcterJAL-2681 canonicalise DB source before fetching to...
2017-08-22 Jim ProcterJAL-2681 formatting
2017-08-21 Jim ProcterJAL-2588 don’t test char==gap until we know the shader... feature/2588
2017-08-21 Jim ProcterJAL-2588 field on overview colour finder for default...
2017-08-18 Jim ProcterMerge branch 'feature/2588' into merge/develop_feature...
2017-08-18 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-08-18 kiramtJAL-2664 Adjusted colour of hidden cols/seqs
2017-08-18 kiramtJAL-2664 Correct colouring for rows
2017-08-18 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-08-18 kiramtJAL-2665 Comments
2017-08-18 kiramtJAL-2665 Refactoring (and side-effect fix for JAL-2672)
2017-08-18 kiramtJAL-2665 tidies
2017-08-17 kiramtJAL-2665 Code tidies
2017-08-17 kiramtJAL-2665 Fixed wrapped mode group over >1 panel; and...
2017-08-17 kiramtJAL-2665 partial fix for selection running over 2 wrapp...
2017-08-17 kiramtJAL-2665 Correct position of selection switching from...
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-16 kiramtJAL-2665 Working with hidden columns
2017-08-16 kiramtJAL-2665 Added hidden columns group selection - almost...
2017-08-16 kiramtJAL-2665 Selecting on wrapped alignments
2017-08-16 kiramtJAL-2556 start to account for wrapped alignments
2017-08-16 kiramtJAL-2665 Tidy
2017-08-16 kiramtJAL-2665 fix resize
2017-08-16 kiramtJAL-2556 Code tidy
2017-08-16 kiramtJAL-2556 Resolved group update on colouring and escape
2017-08-16 kiramtJAL-2665 Added sequence group update event.
2017-08-16 kiramtJAL-2665 Draw selection group - works on scroll but...
2017-08-15 kiramtJAL-2265 turn off NPE
2017-08-14 Jim ProcterJAL-2335 choose appropriate alphabet for filtering...
2017-08-14 Jim ProcterJAL-2335 source formatting
2017-08-14 Jim ProcterJAL-2335 filterNonStandardResidues configurable for...
2017-08-14 Jim ProcterMerge branch 'patch/JAL-2663_filterAACons' into develop
2017-08-14 Jim ProcterJAL-2663 flag and filter to exclude non-standard amino...
2017-08-14 Jim ProcterJAL-2663 source formatting
2017-08-14 kiramtJAL-2664 Initial change to drawing hidden regions in...
2017-08-10 gmungocJAL-2660 used saved value of ignoreGapsInConsensus...
2017-08-09 Jim ProcterJAL-2426 Rfam download suffix
2017-08-09 Jim ProcterJAL-2426 JAL-1270 report Xfam download URL used if...
2017-08-09 Jim ProcterJAL-2425 raw stockholm download URLs
2017-08-09 Jim ProcterJAL-2425 remove overloaded getSequenceRecords method...
2017-08-09 Jim ProcterMerge branch 'bug/JAL-2634' into develop
2017-08-09 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
2017-08-08 gmungocJAL-2560 alternative fix (reinstate lost line of code)
2017-08-08 gmungocJAL-2649 JAL-2650 wait for Conservation calc to complet...
2017-08-08 gmungocJAL-2650 configure new viewport settings before selecti...
2017-08-07 Jim ProcterMerge branch 'bug/JAL-2592userDefinedScheme' into develop
2017-08-03 gmungocJAL-2435 test for 'mirror font' option visible (not...
2017-08-01 Jim ProcterMerge branch 'bug/JAL-2632' into develop
2017-08-01 gmungocJAL-2611 reinstate missed merge - again!
2017-08-01 gmungocMerge branch 'feature/JAL-2611' into develop
2017-08-01 gmungocMerge branch 'bug/JAL-2630gradColourUpdateOverview...
2017-07-31 kiramtJAL-2634 Make overview box full height when alignment... bug/JAL-2634
2017-07-31 gmungocJAL-2623 updated Overview/structure on input of thresho... bug/JAL-2630gradColourUpdateOverview
2017-07-31 kiramtJAL-2634 Added null test for graphics in AnnotationPane...
2017-07-31 gmungocJAL-2622 don't vertical scroll wrapped alignment id...
2017-07-31 gmungocJAL-2623 JAL-2015 set Below Threshold on FeatureColour...
2017-07-31 gmungocJAL-2630 applet update overview on release of threshold...
2017-07-28 kiramtJAL-2632 Added paintAlignment(true) to show cols code
2017-07-28 gmungocJAL-147 corrected status bar message for wrapped scroll...
2017-07-28 gmungocJAL-2622 no vertical scroll of wrapped alignment from...
2017-07-28 gmungocJAL-2006 squash rounding errors at min/max threshold...
2017-07-28 gmungocJAL-2630 update Overview/structure from graduated colou...
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring...
2017-07-22 gmungocJAL-2623 initialise colour threshold slider correctly
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611
2017-07-18 kiramtJAL-2611 Tidies, initial unit tests
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi...
2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment!
2017-07-18 kiramtJAL-2611 Better
2017-07-17 kiramtJAL-2611 Still not happy with behaviour
2017-07-14 kiramtJAL-2611 First pass, not thrilled with hidden column...
2017-07-14 kiramtMerge branch 'feature/JAL-2613' into feature/JAL-2611
2017-07-14 kiramtJAL-2611 Pre-merge checkin
2017-07-13 kiramtJAL-2611 Added overview dimensions test for position...
2017-07-13 kiramtJAL-2613 Unit tests and a fix. Phew.
2017-07-12 kiramtJAL-2613 Centre alignment at click point
2017-07-12 kiramtJAL-2588 Check/fix show boxes settings + unit test...
2017-07-12 kiramtJAL-2588 Added tests
2017-07-11 kiramtJAL-2588 (and JAL-2610, JAL-2603) mid refactor
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