JAL-2778 reinstate transparent windows to avoid ugly borders on OSX
[jalview.git] / src /
2018-02-21 Jim ProcterJAL-2778 reinstate transparent windows to avoid ugly... bug/JAL-2778again
2018-02-21 kiramtJAL-2778 Adjust cursor changes in overview panel
2018-02-21 kiramtJAL-2778 Revert back to old synchronisation
2018-02-05 kiramtJAL-2788 possible adjustments to sequence accesses
2018-01-26 kiramtJAL-2778 try another way to draw sequences with reduced...
2018-01-26 kiramtJAL-2778 tightened up use of resetAlignmentDims
2018-01-25 kiramtJAL-2778 Tidy
2018-01-25 kiramtJAL-2778 added JAL-2851 fix to avoid confusion
2018-01-25 kiramtJAL-2778 Reinstate id width adjuster
2017-11-06 kiramtJAL-2778 replace setScrollValues call in AlignmentPanel...
2017-11-06 kiramtJAL-2778 tidy
2017-11-03 kiramtJAL-2778 Changed local repaint to alignment repaint...
2017-11-03 kiramtJAL-2778 Reduced cursor set/reset in overview mouse...
2017-11-03 kiramtJAL-2778 Reduced calculation load for overview box
2017-11-01 kiramtJAL-2778 remove unnecessary code running in repaint
2017-11-01 kiramtMerge remote-tracking branch 'origin/imp/JAL-2775'...
2017-11-01 kiramtJAL-2778 added setopaque again, and super.paintComponent(s)
2017-11-01 kiramtMerge branch 'develop' into imp/JAL-2775 imp/JAL-2775
2017-10-31 kiramtJAL-2774 Fix repaint artefacts
2017-10-31 kiramtJAL-2774 Fixed merge issues
2017-10-31 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-10-27 gmungocJAL-2526 updated javadoc
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover...
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop
2017-10-26 Jim ProcterJAL-2793 cancelling font changed dialog didn't call...
2017-10-26 Jim ProcterMerge branch 'bug/JAL-2776toggleGroupColour' into develop
2017-10-26 Jim ProcterMerge branch 'features/JAL-2685pairwiseSeqLimits' into...
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
2017-10-25 Jim ProcterMerge branch 'bugs/JAL-2779_osx_dialogsequencingbroke...
2017-10-25 Jim ProcterJAL-2779 remove empty block and if statement
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
2017-10-25 Jim ProcterJAL-2790 provide a cancel button for JABAWS and AACon...
2017-10-25 Jim ProcterJAL-2392 auto boxing rather than explicit Long as key
2017-10-24 gmungocJAL-2495 highlight all mapped sequences from structure...
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into...
2017-10-24 gmungocJAL-2788 corrected merge error in propertyChange
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and...
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop
2017-10-23 gmungocJAL-2776 repaint everything on toggle group colour bug/JAL-2776toggleGroupColour
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress...
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle...
2017-10-20 Jim ProcterJAL-2779 keep a reference to original Aqua manager...
2017-10-20 Jim ProcterJAL-2779 remove OSX platform specific import (not neede...
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253
2017-10-20 gmungocJAL-2609 fully erase scale above, tidy code change
2017-10-19 gmungocJAL-2609 adjustments for test findings
2017-10-19 kiramtMerge branch 'develop' into bug/JAL-2609attemptedmerge
2017-10-18 Jim ProcterJAL-2779 switch order for updating the current alignmen...
2017-10-18 Jim ProcterJAL-2779 remove dead code
2017-10-18 Jim ProcterJAL-2779 hook in our own AquaInternalFrameManager when...
2017-10-18 Jim ProcterJAL-2779 JAL-1551 source formatting
2017-10-18 Jim ProcterJAL-2779 patch so closing most recent frame doesn’t...
2017-10-18 Jim ProcterJAL-2779 original version of AquaInternalFrame Manager
2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe...
2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop
2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional...
2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity
2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain bugs/JAL-2777_whitespaceChain
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of...
2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of...
2017-10-16 kiramtJAL-2775 added repaint clipping
2017-10-13 kiramtJAL-2774 Created single event for update to both start...
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-11 gmungocJAL-2772 check array bounds for sequence access bug/JAL-2772pdbArrayBounds
2017-10-11 gmungocJAL-2609 tidy label width code, some checkstyle warnings
2017-10-11 gmungocMerge branch 'bug/JAL-2742' into develop
2017-10-11 gmungocMerge branch 'bug/JAL-2757_uniprotftsbadquery' into...
2017-10-11 gmungocJAL-2757 fix PDB also; suppress stack trace and compile... bug/JAL-2757_uniprotftsbadquery
2017-10-11 kiramtJAL-2742 removed unused getViewAsCigars
2017-10-11 kiramtJAL-2609attemptedmerge tidy
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f...
2017-10-10 kiramtJAL-2690attemptedmerge seems to work
2017-10-10 Jim ProcterJAL-2392 wrap public progress bar methods as InvokeLate...
2017-10-10 Jim ProcterJAL-2392 formatting
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop
2017-10-10 kiramtJAL-2690attemptedmerge partial merge
2017-10-09 gmungocJAL-2480 use interface type for sequenceFeatureStore
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries
2017-10-09 gmungocJAL-2523 convenience method to get model organisms
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method.
2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response
2017-10-04 gmungocJAL-2523 start of refactoring...
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS
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