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JAL-1912 added documentation
[jalview.git] / src /
2015-10-07 tcofoegbuJAL-1912 added documentation features/JAL-1912_biojson-per-sequence-annotation tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 formatting tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 javadoc for adjustForAlignment stating current... tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 efficiency: look up sequenceMapping once per... tree | commitdiff
2015-10-07 Jim ProcterMerge branch 'features/JAL-1912_biojson-per-sequence... tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 house keeping tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 added null check for SequenceMapping variable... tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson... tree | commitdiff
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc tree | commitdiff
2015-10-05 tcofoegbuJAL-1908 bugfix tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 updated AnnotationDisplaySettingPojo tree | commitdiff
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon... tree | commitdiff
2015-10-02 Jim ProcterJAL-1900 JAL-1625 disable iconify button for internal... tree | commitdiff
2015-10-01 tcofoegbuJAL-1912 Double.NaN breaks JSON serialization - added... tree | commitdiff
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt... tree | commitdiff
2015-09-30 tcofoegbuhouse keeping tree | commitdiff
2015-09-30 tcofoegbuJAL-1860 house keeping tree | commitdiff
2015-09-30 tcofoegbuJAL-1852 made disabling querying of unpublished PDB... tree | commitdiff
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... tree | commitdiff
2015-09-30 tcofoegbuJAL-1852 disable querying of unpublished PDB entries... tree | commitdiff
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... tree | commitdiff
2015-09-28 tcofoegbumerge tree | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... tree | commitdiff
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after... tree | commitdiff
2015-09-25 gmungocJAL-1859 try hoverDelay of 0.1s in Jmol for more respon... tree | commitdiff
2015-09-25 tcofoegbumerge tree | commitdiff
2015-09-25 tcofoegbuJAL-1907 bugfix for NPE while parsing a features file tree | commitdiff
2015-09-25 gmungocJAL-1815 restore split frame geometry correctly includi... tree | commitdiff
2015-09-25 tcofoegbumerge tree | commitdiff
2015-09-25 tcofoegbuJAL-1860 disabled default enter behaviour on pdb search... tree | commitdiff
2015-09-24 gmungocJAL-1905 parse url including & correctly tree | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... tree | commitdiff
2015-09-24 tcofoegbuJAL-1860 only allow enter key when valid selection... tree | commitdiff
2015-09-24 tcofoegbuJAL-1860 keyboard operation of pdb sequence fetcher... tree | commitdiff
2015-09-24 tcofoegbuJAL-1896 bugfix to enabled Jalview restore clustal... tree | commitdiff
2015-09-22 tcofoegbuJAL-1774 house keeping tree | commitdiff
2015-09-21 tcofoegbumerge tree | commitdiff
2015-09-21 tcofoegbuJAL-1774 modifed warning dialog to use JVDialog rather... tree | commitdiff
2015-09-21 gmungocJAL-1799 update height of annotation labels to match... tree | commitdiff
2015-09-21 gmungocJAL-1152 set initial state of show alignment/sequence... tree | commitdiff
2015-09-18 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-09-18 Jim ProcterJAL-1270 JAL-1889 move the stevesoft test back into... tree | commitdiff
2015-09-18 Jim ProcterJAL-1889 remove non-UTF8 characters so we can build... tree | commitdiff
2015-09-18 tcofoegbuJAL-1774 JAL-1506 revised implementaion for clear highl... tree | commitdiff
2015-09-18 tcofoegbuJAL-1506 revised implementation to clear only selected... tree | commitdiff
2015-09-18 gmungocJAL-1859 reinstated full path to file option (for local... tree | commitdiff
2015-09-17 tcofoegbuJAL-1774 bugfix for misleading message after trying... tree | commitdiff
2015-09-16 tcofoegbumerge tree | commitdiff
2015-09-16 tcofoegbuJAL-1486 off-by-one error bugfix tree | commitdiff
2015-09-16 gmungocJAL-1882 variable renamed to avoid confusion with membe... tree | commitdiff
2015-09-16 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus... tree | commitdiff
2015-09-16 tcofoegbumerge tree | commitdiff
2015-09-16 tcofoegbuJAL-1881 Bugfix for annotation import from BioJS tree | commitdiff
2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils... tree | commitdiff
2015-09-16 gmungocJAL-1859 code tidy, remove 'absolute URL' option tree | commitdiff
2015-09-16 gmungocJAL-1859 debug logging removed tree | commitdiff
2015-09-16 gmungocJAL-1859 revert to resolving full path to PDB file tree | commitdiff
2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as... tree | commitdiff
2015-09-16 gmungocJAL-1859 temporary debug output tree | commitdiff
2015-09-15 gmungocJAL-1859 use unresolved PDB filename tree | commitdiff
2015-09-15 gmungocJAL-1859 strip file name from applet documentbase tree | commitdiff
2015-09-15 gmungocJAL-1859 refactoring / debugging added tree | commitdiff
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort... tree | commitdiff
2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match... tree | commitdiff
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... tree | commitdiff
2015-09-14 gmungocJAL-1684 align added alignment to match original in... tree | commitdiff
2015-09-14 gmungocJAL-1684 align added alignment to match original in... tree | commitdiff
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-10 Jim ProcterMerge branch 'develop' into release/2_9_documentation tree | commitdiff
2015-09-10 Jim ProcterJAL-1370 correct i18n message for reference sequence... tree | commitdiff
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference... tree | commitdiff
2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence tree | commitdiff
2015-09-09 gmungocJAL-857 added debug output to track down document base... tree | commitdiff
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu... tree | commitdiff
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped... tree | commitdiff
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation tree | commitdiff
2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true... tree | commitdiff
2015-09-08 gmungocJAL-1859 debug output of pdb mappings (mine and SSMs) tree | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... tree | commitdiff
2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-09-07 tcofoegbumerge tree | commitdiff
2015-09-07 tcofoegbuJAL-1831 updated BioJSON schema tree | commitdiff
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef... tree | commitdiff
2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the... tree | commitdiff
2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in... tree | commitdiff
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotati... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit... tree | commitdiff
2015-09-05 Jim ProcterJAL-1871 reinstate random generation of palette when... tree | commitdiff
2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time... tree | commitdiff
2015-09-05 Jim ProcterMerge branch 'bugfix/JAL-841_JAL-1081' into develop tree | commitdiff
2015-09-05 Jim ProcterJAL-1233 tidy up and use same RNA helix colours in... tree | commitdiff
2015-09-05 Jim ProcterJAL-1081 JAL-891 don’t overwrite global colour scheme... tree | commitdiff
2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection... tree | commitdiff
2015-09-04 Jim ProcterJAL-1847 Merge branch 'thiago' into develop tree | commitdiff
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be... tree | commitdiff
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