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JAL-2320 thread to close Chimera viewer panel if Chimera shut down
[jalview.git] / src /
2016-11-10 gmungocJAL-2320 thread to close Chimera viewer panel if Chimer... features/JAL-2320_closeChimeraAction tree | commitdiff
2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera... tree | commitdiff
2016-11-08 gmungocJAL-2301 made T hydrophobic as per the cited conservati... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 updated method calls tree | commitdiff
2016-11-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-08 tcofoegbuJAL-2292 renamed method and improved implementation... tree | commitdiff
2016-11-07 gmungocJAL-2272 unit tests added for Platform.isControlDown tree | commitdiff
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ... tree | commitdiff
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 squashed bug that breaks feature mapping for... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 added javadoc for compareChar(..) utility... tree | commitdiff
2016-11-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-04 tcofoegbuJAL-2195 JAL-2262 house keeping tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 fix for wrong mapping output in sequence mappi... tree | commitdiff
2016-11-04 tcofoegbuJAL-2292 Wrote utility method for comparing two char... tree | commitdiff
2016-11-04 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-04 kiramtJAL-2282 Better check for existing url links tree | commitdiff
2016-11-04 gmungocJAL-2272 right mouse button on Mac is not Cmd equivalent! tree | commitdiff
2016-11-04 kiramtJAL-2282 Remove Cache dependency from applet tree | commitdiff
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;... tree | commitdiff
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links tree | commitdiff
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked... tree | commitdiff
2016-11-03 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-03 tcofoegbuJAL-2312 Bug fix for repeated mapping generation from... tree | commitdiff
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'... tree | commitdiff
2016-11-02 kiramtJAL-2281 Use DBRefs.selectRefs to uppercase URL link... tree | commitdiff
2016-11-02 kiramtJAL-2282 Refactor applet too tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-11-02 gmungocJAL-98 wording "negatively conserved" now "absence... tree | commitdiff
2016-11-02 kiramtJAL-2282 Code tidy tree | commitdiff
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces... tree | commitdiff
2016-11-02 kiramtJAL-2282 URLLink unit tests updated tree | commitdiff
2016-11-01 gmungocConservation now using ResidueCount; tests added tree | commitdiff
2016-11-01 gmungocJAL-98 use Integer constants; tests added for propHash... tree | commitdiff
2016-11-01 gmungocJAL-98 typo in javadoc tree | commitdiff
2016-11-01 gmungocJAL-98 simplified repeat() method tree | commitdiff
2016-11-01 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac... tree | commitdiff
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION... tree | commitdiff
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink tree | commitdiff
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code tree | commitdiff
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases... tree | commitdiff
2016-10-31 gmungocJAL-98 round when formatting dec places tree | commitdiff
2016-10-31 kiramtForce double-clicking to use sequence_id cases and... tree | commitdiff
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC... tree | commitdiff
2016-10-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association... tree | commitdiff
2016-10-27 gmungocJAL-98 refactor bleachColour() to ColorUtils tree | commitdiff
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box tree | commitdiff
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog tree | commitdiff
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop tree | commitdiff
2016-10-26 gmungocJAL-2286 modal residue check + commenting tree | commitdiff
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has... tree | commitdiff
2016-10-26 gmungocJAL-2286 javadoc, refactor, unit tests for threshold... tree | commitdiff
2016-10-26 tcofoegbuMerge branch 'features/JAL-2284_export-biojsmsa-via... tree | commitdiff
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli tree | commitdiff
2016-10-25 gmungocJAL-2286 use constant for fixed colours tree | commitdiff
2016-10-25 gmungocJAL-98 javadoc corrected tree | commitdiff
2016-10-25 gmungocJAL-98 javadoc added tree | commitdiff
2016-10-25 gmungocJAL-98 minor fixes to / tests for annotation derivation tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-25 tcofoegbuMerge branch 'bug/JAL-2277_html-output-wrapped-mode... tree | commitdiff
2016-10-25 tcofoegbuJAL-2277 Improvement to support html+svg export in... bug/JAL-2277_html-output-wrapped-mode tree | commitdiff
2016-10-25 gmungocJAL-98 field comments updated tree | commitdiff
2016-10-25 gmungocJAL-98 small efficiency fix + commenting tree | commitdiff
2016-10-25 gmungocJAL-98 javadoc / comments updated tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 gmungocJAL-98 fixme comment removed - nothing to do tree | commitdiff
2016-10-24 gmungocJAL-98 ResidueCount 100% test coverage (and bug fixes!) tree | commitdiff
2016-10-24 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-10-24 kiramtUnit tests for UrlLink bug/JAL-2281JAL-2282 tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'bug/JAL-2272cmdClickGroupEdit' into develop tree | commitdiff
2016-10-24 gmungocJAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl... bug/JAL-2272cmdClickGroupEdit tree | commitdiff
2016-10-24 kiramtFixed dialog box messages in English and Spanish. Adjus... tree | commitdiff
2016-10-24 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-24 kiramtCorrect Preferences to check for SEQUENCE_NAME as well... tree | commitdiff
2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing... tree | commitdiff
2016-10-24 kiramtCode tidy up. Unit test passes. tree | commitdiff
2016-10-22 kiramtWorking links menu tree | commitdiff
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file. tree | commitdiff
2016-10-17 kiramtMerge remote-tracking branch 'origin/bug/JAL-1552dragnd... tree | commitdiff
2016-10-17 kiramtacceptDrop call added before getTransferable in alignme... bug/JAL-1552dragndroptake2 tree | commitdiff
2016-10-17 tcofoegbuJAL-2262 JAL-2195 Improvement to set PDBId availability... tree | commitdiff
2016-10-17 kiramtRe-attempt to fix JAL-1552 by removing extra calls... tree | commitdiff
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties tree | commitdiff
2016-10-13 gmungocJAL-2253 2 second timeout on ping URL, default 5 minute... feature/JAL-2553ensemblGenomes tree | commitdiff
2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-13 gmungocJAL-1479 revise warning message to suit all contexts bug/JAL-2044jmolModelBinding tree | commitdiff
2016-10-13 gmungocJAL-2044 increase Jmol file load timeout from 5 to... tree | commitdiff
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has... tree | commitdiff
2016-10-13 gmungocJAL-2044 include model name in progress bar message... tree | commitdiff
2016-10-11 tcofoegbuMerge branch 'features/JAL-2039_Offer_cached_structuref... tree | commitdiff
2016-10-11 tcofoegbuJAL-2039 improvement to offer cached structure view... features/JAL-2039_Offer_cached_structurefiles_immediately tree | commitdiff
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop tree | commitdiff
2016-10-11 gmungocJAL-2241 check for null jprovider when processing New... tree | commitdiff
2016-10-11 kiramtJAL-1552 added acceptDrop call before getTransferable... bug/JAL-1552dragndropurl tree | commitdiff
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