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JAL-2393 JAL-2416 refresh the score model menu when updating gui enabled/disabled...
[jalview.git] / src /
2017-05-03 Jim ProcterJAL-2393 JAL-2416 refresh the score model menu when... features/JAL-2393customMatrices tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 validate CalculationChooser when selection... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 enable/disable CalculationChooser buttons... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 compare size of input against minimums for... tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 OK->Calculate, Cancel->Close buttons tree | commitdiff
2017-05-02 Jim ProcterJAL-1632 removed ‘tree’ option and changed dialog layout tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop tree | commitdiff
2017-05-02 gmungocJAL-2499 inlined two 1-line methods tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-01 tcofoegbuJAL-2482 bug fix tree | commitdiff
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to tree | commitdiff
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 use constant for preference token tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 consensus calculation doesn’t depend on occupa... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 desktop preferences for occupancy tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 only create and add occupancy row to alignment... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 fix: updated behaviour for SequenceGroup.findA... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 fixed behaviour for null parameters in line... tree | commitdiff
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations tree | commitdiff
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy tree | commitdiff
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts tree | commitdiff
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 bug fix tree | commitdiff
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread... tree | commitdiff
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs tree | commitdiff
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped... tree | commitdiff
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row... tree | commitdiff
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text tree | commitdiff
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header... tree | commitdiff
2017-04-19 tcofoegbuJAL-2482 added null check tree | commitdiff
2017-04-18 tcofoegbuJAL-2482 Bugfix tree | commitdiff
2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree... tree | commitdiff
2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned tree | commitdiff
2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable tree | commitdiff
2017-04-12 gmungocJAL-2403 public static methods to convert distance... tree | commitdiff
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel... tree | commitdiff
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira... tree | commitdiff
2017-04-11 gmungocJAL-2428 Javadoc tree | commitdiff
2017-04-11 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur... tree | commitdiff
2017-04-10 tcofoegbuMerge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux... tree | commitdiff
2017-04-10 tcofoegbuJAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux tree | commitdiff
2017-04-10 tcofoegbuMerge branch 'develop' into bug/JAL-2255_seq-fetcher... tree | commitdiff
2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA tree | commitdiff
2017-04-10 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour... tree | commitdiff
2017-04-09 gmungocJAL-2393 remove unused commented code tree | commitdiff
2017-04-07 gmungocJAL-2393 code tidying for review comments tree | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout check... tree | commitdiff
2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of... tree | commitdiff
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but... tree | commitdiff
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour... tree | commitdiff
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314 tree | commitdiff
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461 tree | commitdiff
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... tree | commitdiff
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView tree | commitdiff
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups tree | commitdiff
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items... tree | commitdiff
2017-03-30 gmungocJAL-2401 code and help tidy for review comments tree | commitdiff
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups tree | commitdiff
2017-03-29 gmungocJAL-2416 JAL-728 reduced dependency on Blosum62 impleme... tree | commitdiff
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle... tree | commitdiff
2017-03-29 gmungocJAL-2416 explicit constant for unknown/unknown identity... tree | commitdiff
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols... tree | commitdiff
2017-03-28 gmungocJAL-2416 JAL-2403 remove unused '*' row/column from... tree | commitdiff
2017-03-28 gmungocJAL-2403 further test coverage for ScoreMatrix, min... tree | commitdiff
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser tree | commitdiff
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex... tree | commitdiff
2017-03-27 gmungocJAL-2416 class Javadoc updates prior to parsing changes tree | commitdiff
2017-03-27 gmungocJAL-2468 change score model in PCAModel when switching tree | commitdiff
2017-03-27 gmungocJAL-2416 tidy up after switch from ' ' to '-' in score... tree | commitdiff
2017-03-27 gmungocJAL-2416 score matrix gap symbol (if any) dynamically... tree | commitdiff
2017-03-27 gmungocJAL-2416 tooltip with descriptions for score models... tree | commitdiff
2017-03-27 gmungocJAL-2416 add score model description field for tooltip... tree | commitdiff
2017-03-27 gmungocJAL-2403 SWDistanceModel now SmithWatermanModel - a... tree | commitdiff
2017-03-27 gmungocJAL-2416 use '-' not space for gap in score matrices tree | commitdiff
2017-03-27 gmungocJAL-2428 unused method deleted tree | commitdiff
2017-03-27 gmungocJAL-2403 PIDDistanceModel deleted as superseded by... tree | commitdiff
2017-03-27 gmungocJAL-2428 pass AlignmentView to TreeModel so Show Input... tree | commitdiff
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... tree | commitdiff
2017-03-24 gmungocJAL-2428 use 'correct' name for selected score model tree | commitdiff
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML... tree | commitdiff
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