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Merge branch 'features/JAL-2446NCList' into
[jalview.git] / src /
2017-06-05 gmungocMerge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor tree | commitdiff
2017-06-05 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-04 Jim ProcterJAL-2228 java 1.7 compliance tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 only hide/show columns intersecting with curre... tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 get bitset representing hidden columns tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 use HiddenColumns.hideMarkedBits and take... tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 method taking a BitSet for hiding columns tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 bug fix - BitSet.set is [start,end+1) tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 ‘Hide Insertions’ now operates on selection... tree | commitdiff
2017-06-04 Jim ProcterJAL-2291 SequenceI.getInsertionsAsBits for convenient... tree | commitdiff
2017-06-04 Jim ProcterJAL-2582 comment about IDs being lost if they resembl... tree | commitdiff
2017-06-04 Jim ProcterJAL-2582 recognise ENS…P peptide IDs and make two getPa... tree | commitdiff
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2578' into develop tree | commitdiff
2017-06-02 Jim ProcterMerge branch 'bug/JAL-2577' into develop tree | commitdiff
2017-06-02 Jim ProcterMerge branch 'features/JAL-2228_featureSetCounts_minRan... tree | commitdiff
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-06-02 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-02 gmungocJAL-2526 additional tests for findPosition with/without... tree | commitdiff
2017-06-02 tcofoegbuJAL-2473 revised default minimum dimension for Alignmen... tree | commitdiff
2017-06-02 Jim ProcterJAL-2228 always create zero score annotations, since... tree | commitdiff
2017-06-02 Jim ProcterJAL-2228 always set minimum for count to zero for annot... tree | commitdiff
2017-06-02 kiramtJAL-2577 Don't allow viewport ranges below 0. Unit... bug/JAL-2577 tree | commitdiff
2017-06-02 kiramtJAL-2578 Moved hidden columns reveal to before selectio... bug/JAL-2578 tree | commitdiff
2017-06-01 gmungocJAL-2526 additional calls to sequenceChanged() after... tree | commitdiff
2017-06-01 gmungocJAL-2526 zapCursor() renamed sequenceChanged() tree | commitdiff
2017-06-01 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 Jim ProcterMerge branch 'features/JAL-1648_cache_user_inputs'... tree | commitdiff
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop tree | commitdiff
2017-05-31 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-05-31 gmungocJAL-2483 JAL-2575 don't sort newly discovered features tree | commitdiff
2017-05-31 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-31 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1... tree | commitdiff
2017-05-31 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly tree | commitdiff
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571 tree | commitdiff
2017-05-30 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by... tree | commitdiff
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to... tree | commitdiff
2017-05-30 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping... tree | commitdiff
2017-05-30 gmungocJAL-2526 first draft of findIndex/findPosition with... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop tree | commitdiff
2017-05-29 tcofoegbuJAL-1648 improvement on finder searchbox keyboard contr... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-29 Jim ProcterJAL-2533 update javadoc features/JAL-2465_No-mapping_Jmol-structures-loaded-via-url tree | commitdiff
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 tcofoegbuJAL-1648 code fix - enter key should pick selected... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2536' into develop tree | commitdiff
2017-05-29 Jim ProcterJAL-2536 tweak javadoc wording tree | commitdiff
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 gmungocJAL-2526 Sequence.findPositions to get residue position... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2517cancelAppletColour' into... tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2547tooltipOnGap' into develop tree | commitdiff
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus... tree | commitdiff
2017-05-27 Jim ProcterJAL-2562 javadoc TODO tree | commitdiff
2017-05-26 kiramtJAL-2491 Missed port to applet from JAL-1691 bug/JAL-2491 tree | commitdiff
2017-05-26 tcofoegbuJAL-2465 Improvement to re-instate storing recently... tree | commitdiff
2017-05-26 tcofoegbuJAL-2465 fix to prevent files loaded from the system... tree | commitdiff
2017-05-26 tcofoegbuMerge branch 'features/JAL-1648_cache_user_inputs'... tree | commitdiff
2017-05-26 tcofoegbuJAL-1648 fix to transfer focus back to alignment frame... tree | commitdiff
2017-05-26 gmungocJAL-2290 no update if no change of residue JAL-2547... tree | commitdiff
2017-05-26 gmungocJAL-2480 move ContiguousI and Range to jalview.datamodel tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-25 Jim ProcterMerge branch 'develop' into features/JAL-1648_cache_use... tree | commitdiff
2017-05-25 kiramtJAl-2034 Ported to applet bug/JAL-2034contextchange tree | commitdiff
2017-05-25 kiramtJAL-2034 don't update overview after click without... tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-05-25 gmungocJAL-2505 simplifying number of SequenceFeature construc... tree | commitdiff
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group... tree | commitdiff
2017-05-25 kiramtMerge branch 'bug/JAL-2551' into bug/JAL-2034contextchange tree | commitdiff
2017-05-24 gmungocJAL-2505 make SequenceFeature type, begin, end, feature... tree | commitdiff
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to... tree | commitdiff
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end... tree | commitdiff
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters tree | commitdiff
2017-05-24 gmungocMerge branch 'bug/JAL-2541cutWithFeatures' into feature... tree | commitdiff
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift... tree | commitdiff
2017-05-24 kiramtJAL-2551 Fix to group colouring when group extent is... bug/JAL-2551 tree | commitdiff
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for... tree | commitdiff
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup tree | commitdiff
2017-05-24 gmungocJAL-2505 delete and readd modified feature after Cut... tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove... tree | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... tree | commitdiff
2017-05-23 gmungocJAL-2547 don't show features in tooltip over a gap bug/JAL-2547tooltipOnGap tree | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... tree | commitdiff
2017-05-23 gmungocJAL-2490 improved lookup of features for Export Feature... tree | commitdiff
2017-05-23 gmungocJAL-2480 methods to get features for group tree | commitdiff
2017-05-22 gmungocJAL-2505 use setter not direct access to sf.description tree | commitdiff
2017-05-22 gmungocJAL-2505 updates after conflicting merge of JAL-2504 tree | commitdiff
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-22 gmungocJAL-2504 update the right feature colour when creating... bug/JAL-2510amendFeatures tree | commitdiff
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-22 gmungocJAL-2544 check feature overlaps selection region tree | commitdiff
2017-05-22 gmungocJAL-2543 identify as JSON before HTML tree | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... tree | commitdiff
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