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JAL-2877 disabled Jalview's own viewer for testing
[jalview.git]
/
src
/
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Changed to overlay on via graphics context...
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Missed commit
tree
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commitdiff
2017-11-14
kiramt
JAL-2811 Made it work for hidden columns/seqs too
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Attempt at cursor fix for wrapped mode
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'bug/JAL-2811' into bug/JAL-2831
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 deal with hidden cols and seqs in new cursor...
tree
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commitdiff
2017-11-14
kiramt
JAL-2831 Added move viewport event and set up cursor...
tree
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commitdiff
2017-11-14
kiramt
Merge branch 'imp/JAL-2774' into bug/JAL-2831
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 interface comments
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 some more name changes
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 more name changes for clarity
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 more interface name changing
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 name changed of interfaces for consistency
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 Jalview sequence binding interface expanded
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 TreeParser now interface based
tree
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commitdiff
2017-11-13
kiramt
JAL-2811 Tidy
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 Added tree building interface
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 name change
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 deleted old Aptx class for loading just Newick...
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 more interface work
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2794 removed unused interface
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 undid accidental double (buggy) binding, more...
tree
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commitdiff
2017-11-13
Jim Procter
Merge branch 'features/JAL-2758_shorteruniprot' into...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 remove configurable behaviour - Uniprot sequen...
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2758 typo
tree
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commitdiff
2017-11-13
kiramt
JAl-2811 Working for wrapped panels too
tree
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commitdiff
2017-11-13
kiramt
JAL-2811 Add layer for cursor in SeqCanvas
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 warning messages added if Forester detects...
tree
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commitdiff
2017-11-13
Jim Procter
Merge branch 'imp/JAL-2810_ftsIDtab' into develop
tree
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commitdiff
2017-11-13
kjvdheide
JAL-2805 First try at loading tree through Forester...
tree
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commitdiff
2017-11-13
gmungoc
JAL-2176 removed unused Sequence.index
tree
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commitdiff
2017-11-13
kiramt
JAL-2784 new checks for gg==null
bug/JAL-2784
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2810 auto search checkbox state stored as user...
tree
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commitdiff
2017-11-13
gmungoc
JAL-2679 example accession changed to CAD01290
tree
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commitdiff
2017-11-13
Jim Procter
JAL-2810 mainFramTabs -> tabs
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 allow CalcId to match on String equivalence...
doc/JAL-2494_JAL-2828_mergefindAnnotation
tree
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commitdiff
2017-11-10
Jim Procter
JAL-2828 refactored duplicate code for searching lists...
tree
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commitdiff
2017-11-10
gmungoc
JAL-2829 fixes and unit tests
bug/JAL-2829deleteCharsWithGaps
tree
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commitdiff
2017-11-10
gmungoc
JAL-2562 updated findPosition javadoc to match behaviour
tree
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commitdiff
2017-11-10
kjvdheide
JAL-2794 reorganized node select code, added subtree...
tree
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commitdiff
2017-11-10
kjvdheide
JAL-2794 comments comments comments
tree
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commitdiff
2017-11-10
kjvdheide
JAL-2794 most method parameters/class variables made...
tree
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commitdiff
2017-11-10
kjvdheide
JAL-2794 comments, selected node now doesn't have to...
tree
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commitdiff
2017-11-10
kiramt
JAL-2827 related fixes for stem and non-canonical annot...
bug/JAL-2827
tree
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commitdiff
2017-11-09
kiramt
JAL-2827 Fix notched repaint of helix annotation when...
tree
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commitdiff
2017-11-09
kjvdheide
JAL-2794 PaintRefresher support, Aptx node selection...
tree
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commitdiff
2017-11-09
kjvdheide
JAL-2794 interface comment
tree
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commitdiff
2017-11-09
kjvdheide
JAL-2794 Made HashMap with Nodes as keys and sequences...
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Aptx instances get their parent alignment...
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Cleaning up tree conversion, sequences are...
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2795 created static class for forester conversions
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Interface name change (oops)
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 made JalviewTreeViewerBinding an interface
tree
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commitdiff
2017-11-08
kjvdheide
JAL-2794 Added getter for AlignmentViewport to TreeBuilder
tree
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commitdiff
2017-11-08
Jim Procter
Merge branch 'develop' into bug/JAL-2225mapMultipleChains
tree
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commitdiff
2017-11-07
Jim Procter
Merge branch 'imp/JAL-2775' into develop
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 i18n tab label
tree
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commitdiff
2017-11-07
kiramt
JAL-2774 Added javadoc for new event parameters
imp/JAL-2774
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 ‘Close’ is now ‘Cancel’ in SequenceFetcher...
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 working back button shown for bulk ID retrieva...
tree
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commitdiff
2017-11-07
kiramt
JAL-2774 Fix fastpaint of wrapped alignment
tree
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commitdiff
2017-11-07
kiramt
JAL-2821 refactored drawPartialGroupOutline
bug/JAL-2821
tree
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commitdiff
2017-11-07
Jim Procter
JAL-2810 bulk fetch for PDB IDs
tree
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commitdiff
2017-11-06
kjvdheide
JAL-2794 simplified/clarified associating leaves to...
tree
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commitdiff
2017-11-03
kjvdheide
JAL-2794 created tree viewer binding class
tree
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commitdiff
2017-11-03
kjvdheide
JAL-2795 bunch of cleanup and comments
tree
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commitdiff
2017-11-02
kjvdheide
JAL-2795 added back test loop for Aptx tree naming...
tree
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commitdiff
2017-11-02
kjvdheide
JAL-2795 Reverted code changes needed to cluster from...
tree
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commitdiff
2017-11-02
kjvdheide
JAL-2795 Forester now NJ-clusters the DistanceMatrix...
tree
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commitdiff
2017-11-02
kjvdheide
JAL-2795 moved matrix conversion to the ForesterMatrix...
tree
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commitdiff
2017-11-01
kjvdheide
JAL-2795 Sequence[] references now as SequenceI[] ...
tree
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commitdiff
2017-11-01
kjvdheide
JAL-2795 removed sequences[] class variable, more comments
tree
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commitdiff
2017-11-01
kiramt
Merge branch 'develop' into imp/JAL-2775
imp/JAL-2775
tree
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commitdiff
2017-10-31
kiramt
JAL-2774 Fix repaint artefacts
tree
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commitdiff
2017-10-31
kiramt
JAL-2774 Fixed merge issues
tree
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commitdiff
2017-10-31
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-10-31
Jim Procter
JAL-2810 checkbox label for Autosearch
tree
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commitdiff
2017-10-31
Jim Procter
JAL-2810 default border colour
tree
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commitdiff
2017-10-31
kiramt
JAL-2756 update for new EBI https link
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 added error catching for invalid identifier
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 changed getting index of identifier to Stream...
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 rebuilt MatrixConverter to be purely static
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 finalized method arguments; commited forester...
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 removed unneeded for loop (woops) and initiali...
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 implemented getting/setting identifiers
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 added comments links from ForesterMatrix to...
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 removed now unneeded values variable in Forest...
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 add get for all matrix values to MatrixI ...
tree
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commitdiff
2017-10-30
kjvdheide
JAL-2795 foresterMatrix now stores distance values...
tree
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commitdiff
2017-10-29
kjvdheide
JAL-2795 more matrix implementations
tree
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commitdiff
2017-10-28
kjvdheide
JAL-2795 moved ForesterMatrix to ext.forester
tree
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commitdiff
2017-10-28
kjvdheide
JAL-2795 Added get and set values to the converted...
tree
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commitdiff
2017-10-27
Jim Procter
JAL-2810 prototype retrieve ID tab for the Uniprot...
tree
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commitdiff
2017-10-27
kjvdheide
JAL-2795 start of Jalview's Matrix conversion
tree
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commitdiff
2017-10-27
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-10-27
Jim Procter
JAL-2804 update search results when enter pressed or...
tree
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commitdiff
2017-10-27
Jim Procter
JAL-2804 checkbox to enable/disable auto search (with...
tree
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commitdiff
2017-10-27
Jim Procter
JAL-2804 kludge method to test if last key event handle...
tree
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commitdiff
2017-10-27
gmungoc
JAL-2526 updated javadoc
tree
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commitdiff
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