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JAL-4024 only render partially when new view overlaps with last rendered annotation...
[jalview.git] / test / jalview / ext /
2022-03-08 Jim ProcterJAL-3746 apply copyright to tests spike/try_spotless_JAL-3438 tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names tree | commitdiff
2022-02-17 Jim ProcterJAL-3551 patch superpose test for additional undo dis... tree | commitdiff
2022-02-15 Jim ProcterJAL-1761 backbone type parameter for configuring which... tree | commitdiff
2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating... tree | commitdiff
2022-02-15 Jim ProcterJAL-3551 patch test for altloc handling atom spec in... tree | commitdiff
2021-10-18 Jim ProcterJAL-3904 failing test tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-21 Jim ProcterJAL-3829 ignore the fake ID generated when a PDB format... tree | commitdiff
2021-09-02 gmungocJAL-1842 unit test updated for EnsemblGene feature... tree | commitdiff
2021-02-05 gmungocJAL-2422 updated unit test for ChimeraX command change Develop-2_11_2_0-d20210205 tree | commitdiff
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... tree | commitdiff
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of... tree | commitdiff
2020-06-01 gmungocJAL-3518 test result corrected tree | commitdiff
2020-06-01 gmungocJAL-3518 add alwaysRun = true [sigh] tree | commitdiff
2020-06-01 gmungocJAL-3518 more test coverage for structure commands tree | commitdiff
2020-05-29 gmungocJAL-2422 test updated tree | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... tree | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol tree | commitdiff
2020-05-15 gmungocJAL-2422 JAL-3551 unit tests updated for code changes tree | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class tree | commitdiff
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised... tree | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2020-03-16 gmungocJAL-3551 the correct PyMOL colour by chain command tree | commitdiff
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... tree | commitdiff
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX tree | commitdiff
2020-03-03 gmungocJAL-3518 more pull up / test coverage of structure... tree | commitdiff
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct... tree | commitdiff
2020-02-21 gmungocJAL-3518 more extraction of ChimeraX commands as overrides tree | commitdiff
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands... tree | commitdiff
2020-02-06 gmungocJAL-1842 unit test updated for EnsemblGene feature... bug/JAL-3509hideResnum tree | commitdiff
2020-01-28 gmungocJAL-2422 ChimeraX added to Preferences tree | commitdiff
2019-12-13 gmungocJAL-2422 basic proof of concept of ChimeraX opened... tree | commitdiff
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop tree | commitdiff
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... tree | commitdiff
2019-06-14 gmungocJAL-3302 transfer visible 'linked' features to Chimera tree | commitdiff
2019-04-04 gmungocJAL-3220 j2sIgnore on 3 more main methods tree | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL... tree | commitdiff
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ tree | commitdiff
2019-02-28 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into merge... tree | commitdiff
2019-02-20 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into feature... tree | commitdiff
2019-01-29 hansonrtest package fix for List<DBRefEntry> DBrefs (untested) tree | commitdiff
2019-01-17 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL... tree | commitdiff
2018-12-17 Jim ProcterJAL-3174 backout un-needed stacktrace for exception... tree | commitdiff
2018-12-17 Ben SoaresJAL-3174 Merging in some test filename-case fixes tree | commitdiff
2018-12-13 Ben SoaresJAL-3130 Fixing a few more tests that pass on a Mac... tree | commitdiff
2018-12-13 Ben SoaresJAL-3130 Attempting to fix 8 tests that pass on a Mac... tree | commitdiff
2018-12-06 gmungocMerge branch 'develop' into Jalview-BH/JAL-3026-JAL... tree | commitdiff
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server tree | commitdiff
2018-11-01 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into tree | commitdiff
2018-10-25 gmungocJAL-3143 unit tests updated for code changes! tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of... tree | commitdiff
2018-08-21 gmungocJAL-3032 MCview package renamed mc_view in test classes tree | commitdiff
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene... tree | commitdiff
2018-08-10 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of... tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 failing test for structure mapping tree | commitdiff
2018-04-05 Jim ProcterJAL-2945 formatting tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-23 Jim ProcterMerge branch 'features/JAL-2885UniprotHttps' into relea... tree | commitdiff
2018-02-20 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-12 Jim ProcterJAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest... tree | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... tree | commitdiff
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... tree | commitdiff
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... tree | commitdiff
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... tree | commitdiff
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... tree | commitdiff
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added tree | commitdiff
2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd... tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop tree | commitdiff
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 tree | commitdiff
2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain tree | commitdiff
2017-10-09 gmungocJAL-2523 basic sleep and retry (3 times) on 429 respons... features/JAL-2523httpRetries tree | commitdiff
2017-10-09 gmungocJAL-2523 convenience method to get model organisms tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader tree | commitdiff
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence tree | commitdiff
2017-09-19 gmungocJAL-1793 wrapper for plain or indexed VCF + simple... tree | commitdiff
2017-09-19 gmungocJAL-1793 simple tests of reading raw and indexed VCF... tree | commitdiff
2017-08-31 gmungocJAL-2253 safer simpler resolution of identifiers using... tree | commitdiff
2017-06-14 gmungocJAL-2598 Sequence.getSequence return a copy of the... tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features... tree | commitdiff
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn tree | commitdiff
2017-05-31 tcofoegbuFixed failing tests tree | commitdiff
2017-05-31 tcofoegbuJAL-2533 updated unit test to reflect improvement tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL... tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end... tree | commitdiff
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters tree | commitdiff
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... tree | commitdiff
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... tree | commitdiff
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