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JAL-3949 - refactor logging from jalview.bin.Cache to jalview.bin.Console
[jalview.git] / test / jalview / io / vcf / VCFLoaderTest.java
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... blob | commitdiff
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ... blob | commitdiff | diff to current
2019-10-08 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... blob | commitdiff | diff to current
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into blob | commitdiff | diff to current
2019-07-26 gmungocJAL-1793 only decode specific special characters in... blob | commitdiff | diff to current
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation blob | commitdiff | diff to current
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields blob | commitdiff | diff to current
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data blob | commitdiff | diff to current
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute... blob | commitdiff | diff to current
2019-06-17 gmungocJAL-3187 update unit test - protein variants not now... blob | commitdiff | diff to current
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF... blob | commitdiff | diff to current
2019-03-13 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown blob | commitdiff | diff to current
2019-02-22 gmungocJAL-2738 don't set AF as feature score blob | commitdiff | diff to current
2019-01-29 hansonrtest package fix for List<DBRefEntry> DBrefs (untested) blob | commitdiff | diff to current
2018-02-20 gmungocJAL-2897 updated unit test for code change features/JAL-1793VCF blob | commitdiff | diff to current
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... blob | commitdiff | diff to current
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... blob | commitdiff | diff to current
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... blob | commitdiff | diff to current
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... blob | commitdiff | diff to current
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings) blob | commitdiff | diff to current
2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map blob | commitdiff | diff to current
2017-10-27 gmungocJAL-1793 spike branch updated to latest blob | commitdiff | diff to current
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching... blob | commitdiff | diff to current
2017-10-20 gmungocPush 1793 latest to spike branch blob | commitdiff | diff to current
2017-10-09 gmungocJAL-2738 assertion for derived protein variant added blob | commitdiff | diff to current
2017-10-09 gmungocJAL-2738 remove commented code, unit test coverage blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader blob | commitdiff | diff to current
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry blob | commitdiff | diff to current
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene blob | commitdiff | diff to current
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever... blob | commitdiff | diff to current
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader blob | commitdiff | diff to current