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JAL-1705 fetch Uniprot and PDB xrefs for Ensembl protein products
[jalview.git] / test /
2016-01-28 gmungocJAL-1705 refine feature copying to including 5' and... tree | commitdiff
2016-01-28 gmungocJAL-1705 tests added, minor bugfix and refactoring tree | commitdiff
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge tree | commitdiff
2016-01-28 gmungocJAL-1705 merge contiguous ranges when constructing... tree | commitdiff
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name... tree | commitdiff
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring tree | commitdiff
2016-01-21 gmungocJAL-1705 reworked Ensembl clients now fetching and... tree | commitdiff
2016-01-21 gmungocJAL-1705 removed (only) usage of otherwise unused constant tree | commitdiff
2016-01-21 gmungocJAL-1705 features transferred to CDS sequence; makeExon... tree | commitdiff
2016-01-21 gmungocJAL-1705 tidy and todo comment, no functional change tree | commitdiff
2016-01-21 gmungocJAL-1705 tests for amended toString tree | commitdiff
2016-01-21 gmungocJAL-1705 isFromForwardStrand added; toString (for debug... tree | commitdiff
2016-01-21 gmungocJAL-1705 canonicalise ENSEMBL name; code tidy tree | commitdiff
2016-01-11 gmungocJAL-1989 map hidden column ranges tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2016-01-07 tcofoegbumerge tree | commitdiff
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS... tree | commitdiff
2016-01-05 gmungocJAL-653 updating 'align as' tests to match latest tweak... tree | commitdiff
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... tree | commitdiff
2016-01-05 gmungocJAL-1191 check for obsolete term when descriptions... tree | commitdiff
2015-12-23 gmungocJAL-1191 zipped SO OBO file added to /resources, more... tree | commitdiff
2015-12-22 gmungocJAL-1191 more test cases tree | commitdiff
2015-12-22 gmungocJAL-1191 SequenceOntology wrapping/caching SO.OBO via... tree | commitdiff
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... tree | commitdiff
2015-12-22 gmungocJAL-391 new Calculate options to Reverse, Reverse Compl... tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame collections changed from... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame internal refactor, merge... tree | commitdiff
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings' tree | commitdiff
2015-12-03 gmungocJAL-653 handle reverse strand mapping in SearchResults... tree | commitdiff
2015-12-03 gmungocJAL-653 mappings always reside on the dataset alignment... tree | commitdiff
2015-12-03 gmungocJAL-653 handle reverse strand mappings also tree | commitdiff
2015-12-03 gmungocJAL-1827 code and comment tidy up tree | commitdiff
2015-12-02 gmungocJAL-1827 refactored to handle missing residues better tree | commitdiff
2015-11-30 gmungocJAL-653 test for 'resolving GFF mappings to sequences... tree | commitdiff
2015-11-30 gmungocJAL-653 (experimental) methods to resolve dummy to... tree | commitdiff
2015-11-30 gmungocJAL-1270 constructor test added tree | commitdiff
2015-11-30 gmungocJAL-653 getStrand javadoc/refactor/test tree | commitdiff
2015-11-30 gmungocJAL-1270 constructor tests added, compiler warnings... tree | commitdiff
2015-11-30 gmungocJAL-652 further refactoring / tests tree | commitdiff
2015-11-30 gmungocJAL-652 correct case for test file name tree | commitdiff
2015-11-30 gmungocJAL-653 MapList constructor merges any contiguous ranges tree | commitdiff
2015-11-23 gmungocJAL-653 Gff tests moved back in to FeaturesFileTest tree | commitdiff
2015-11-22 gmungocJAL-653 test for 'groups file' and mixed Jalview/GFF tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi... tree | commitdiff
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping tree | commitdiff
2015-11-06 gmungocJAL-1946 unit tests (and comments) for PID() function tree | commitdiff
2015-11-06 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping tree | commitdiff
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... tree | commitdiff
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor tree | commitdiff
2015-10-30 Jim ProcterJAL-1954 formatting tree | commitdiff
2015-10-28 Jim ProcterJAL-1954 test PFAM import results in AlignmentI.hasVali... tree | commitdiff
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing... tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff
2015-10-28 gmungocJAL-1946 additional unit test cases for PID calculation tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... tree | commitdiff
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge... tree | commitdiff
2015-10-15 Jim ProcterJAL-653 JAL-1766 merge 290b1 - fix erroneous conflicts... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 add licensing tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 formatting tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 organise imports tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson... tree | commitdiff
2015-10-05 tcofoegbuJAL-1726 updated test error msg tree | commitdiff
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt... tree | commitdiff
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... tree | commitdiff
2015-09-24 gmungocJAL-1905 parse url including & correctly tree | commitdiff
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... tree | commitdiff
2015-09-24 tcofoegbuJAL-1896 bugfix to enabled Jalview restore clustal... tree | commitdiff
2015-09-21 gmungocJAL-1152 small change to match revised annotation sorti... tree | commitdiff
2015-09-18 gmungocJAL-1270 disable test as not really a test and goes... tree | commitdiff
2015-09-18 Jim ProcterJAL-1270 JAL-1889 move the stevesoft test back into... tree | commitdiff
2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus... tree | commitdiff
2015-09-14 gmungocJAL-1880 updated mapping tests to ensure they handle... tree | commitdiff
2015-09-14 gmungocJAL-1270 test added for separatorListToArray tree | commitdiff
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped... tree | commitdiff
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... tree | commitdiff
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef... tree | commitdiff
2015-09-05 Jim ProcterJAL-1805 move misassigned test from Functional to Network tree | commitdiff
2015-09-03 tcofoegbumerge tree | commitdiff
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... tree | commitdiff
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... tree | commitdiff
2015-09-02 gmungocJAL-1264 test made i18n robust tree | commitdiff
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-09-02 Jim ProcterJAL-1772 non-functional test added. not doing any more... tree | commitdiff
2015-09-02 gmungocJAL-1673 new test to verify transferRESNUMFeatures() tree | commitdiff
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-09-01 Jim ProcterJAL-1853 add test to Functional group tree | commitdiff
2015-09-01 Jim ProcterJAL-1853 test origin of gapChar bug in AlignView method tree | commitdiff
2015-09-01 Jim ProcterJAL-1853 test demonstrating bug tree | commitdiff
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