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JAL-2136 corrected error in annotation file
[jalview.git] / test /
2017-03-28 tcofoegbuJAL-2136 JAL-2137 Added improvement to enable explicit... tree | commitdiff
2017-03-28 tcofoegbuJAL-2136 fixed failing unit test for Phyre2Client tree | commitdiff
2017-03-28 tcofoegbuJAL-2465 unit test for bugfix tree | commitdiff
2017-03-28 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... tree | commitdiff
2017-03-20 tcofoegbuMerge JAL-2136_phyre2_integration to develop tree | commitdiff
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... tree | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... tree | commitdiff
2017-03-01 gmungocJAL-1264 smarter way to skip autocalc'd annotations... tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-02-28 tcofoegbuJAL-2136 added improvement to parse crudelist file... tree | commitdiff
2017-02-20 tcofoegbuJAL-2136 merged and resolved conflicts with 80edaa84d6d... tree | commitdiff
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop tree | commitdiff
2017-02-15 Jim ProcterJAL-2374 tests for SequenceGroup.contains tree | commitdiff
2017-02-15 Jim ProcterJAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi... tree | commitdiff
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316 tree | commitdiff
2017-02-09 gmungocJAL-2371 no test for lower case consensus as not expect... tree | commitdiff
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory tree | commitdiff
2017-02-09 gmungocJAL-2405 check for circular reference in SequenceGroup... tree | commitdiff
2017-02-09 gmungocJAL-2405 set initial selection group alignment context tree | commitdiff
2017-02-08 Jim ProcterJAL-2136 update merged code for JAL-2040 for new FileFo... reviews/features/JAL-2136_phyre2_integration_withJims tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-02-07 gmungocJAL-2397 PCA gap cost uses last column of score matrix tree | commitdiff
2017-02-06 gmungocJAL-2379 computePairwiseScores() moved to ScoreMatrix tree | commitdiff
2017-02-03 gmungocJAL-2379 'direct' pairwise score calculation for PCA... tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-27 gmungocJAL-2099 belated unit test tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-26 kiramtJAL-2316 Updated to use identifiers jalview service tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory tree | commitdiff
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments tree | commitdiff
2017-01-26 gmungocJAL-2380 code tidy after review tree | commitdiff
2017-01-23 gmungocJAL-2379 made SparseMatrix.divide() so as to exactly... tree | commitdiff
2017-01-23 Jim ProcterMerge branch 'features/JAL-2040_JAL-2137_phyre2' into... tree | commitdiff
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact... tree | commitdiff
2017-01-20 tcofoegbuJAL-2375 JAL-2376 First commit of implementation for... tree | commitdiff
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-19 Jim ProcterMerge branch 'spike/JAL-2040_JAL-2137_phyre2' into... features/JAL-2040_JAL-2137_phyre2 tree | commitdiff
2017-01-19 gmungocJAL-2370 unit tests for extracted ColumnSelection.stret... tree | commitdiff
2017-01-18 gmungocJAL-2379 more realistic matrices for unit tests tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two... tree | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-17 gmungocJAL-2379 SparseMatrix alternative to Matrix, both MatrixI tree | commitdiff
2017-01-17 gmungocJAL-2379 SparseDoubleArray added (for use by SparseMatrix) tree | commitdiff
2017-01-16 gmungocJAL-1270 class renamed tree | commitdiff
2017-01-16 gmungocJAL-2380 fix Matrix.postMultiply() tree | commitdiff
2017-01-16 gmungocJAL-1270 tweaks to AlignmentGenerator / client class tree | commitdiff
2017-01-12 gmungocJAL-1270 renamed AlignmentGenerator, and added peptide... tree | commitdiff
2017-01-12 gmungocJAL-2344 now flagging formats as 'identifiable' instead... tree | commitdiff
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI... tree | commitdiff
2017-01-10 gmungocJAL-2377 avoid infinite loop formatting 1.0E-310 tree | commitdiff
2017-01-10 kiramtJAL-2316 Separate label/db name in UrlProviders. Unit... tree | commitdiff
2017-01-09 gmungocJAL-2371 remove ColourSchemeI.findColour(c), pure inter... tree | commitdiff
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... tree | commitdiff
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-06 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-05 gmungocJAL-2374 unit test for (modified) Alignment.findGroup() tree | commitdiff
2017-01-05 gmungocJAL-2371 add test for toggling ignore gaps with PID... tree | commitdiff
2017-01-05 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-05 gmungocJAL-2371 tests added tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-29 gmungocJAL-2630 first pass groovy colour scheme (with slight... tree | commitdiff
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes tree | commitdiff
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... tree | commitdiff
2016-12-21 gmungocJAL-2360 simplified code to create a new colour scheme tree | commitdiff
2016-12-21 gmungocJAL-2360 ColourMenuHelper now builds and selects items... tree | commitdiff
2016-12-21 gmungocJAL-2360 Javadoc and test cases for findAnnotation tree | commitdiff
2016-12-20 gmungocJAL-2360 testRegisterColourScheme to demonstrate a... tree | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... tree | commitdiff
2016-12-19 gmungocJAL-2360 amended toAppletParameter() for reproducible... tree | commitdiff
2016-12-16 kiramtJAL-2316 Added database name column to URL links table... tree | commitdiff
2016-12-16 gmungocJAL-2356 enhanced unit test to verify reuse (or not... tree | commitdiff
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... tree | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-16 gmungocJAL-1354 use i18n text for expected value tree | commitdiff
2016-12-15 kiramtJAL-2316 Changes following review. tree | commitdiff
2016-12-14 gmungocJAL-2360 test added tree | commitdiff
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316 tree | commitdiff
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu tree | commitdiff
2016-12-12 kiramtJAL-2316 Unit test update to UrlLinkTableModel and... tree | commitdiff
2016-12-12 kiramtJAL-2316 Added jalview.urls.* packages tree | commitdiff
2016-12-12 kiramtJAL-2316 More unit testing and adjustments tree | commitdiff
2016-12-12 gmungocJAL-2362 return correct lower-case colour; Javadoc... tree | commitdiff
2016-12-12 kiramtJAL-2316 Unit tests tree | commitdiff
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes... tree | commitdiff
2016-12-09 kiramtJAL-2316 Unit testing, relax constraint that default... tree | commitdiff
2016-12-07 kiramtJAL-2316 Unit test for download client tree | commitdiff
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download tree | commitdiff
2016-12-05 kiramtJAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI... tree | commitdiff
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