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Merge branch 'develop' into features/JAL-1812_JAL-2083_groovyBinding
[jalview.git] / test /
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding tree | commitdiff
2016-06-16 Jim Proctertests for validating start-end number/sequence length... tree | commitdiff
2016-06-16 gmungocJAL-2112 optimisation of EMBL CDS parsing tree | commitdiff
2016-06-15 gmungocJAL-2025 unit tests added tree | commitdiff
2016-06-15 gmungocJAL-2101 unit test updated to match config file tree | commitdiff
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures tree | commitdiff
2016-06-14 tcofoegbuJAL-2047 resolved structure chooser's displayed column... tree | commitdiff
2016-06-10 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-06-10 tcofoegbuJAL-1479 updated SIFTS FTP download URL, added improvem... tree | commitdiff
2016-06-10 Jim ProcterJAL-1941 remove improper test tag from Annotate3D test... tree | commitdiff
2016-06-10 Jim ProcterJAL-1941 Annotate3d tests should be in network group tree | commitdiff
2016-06-01 Jim ProcterJAL-2038 fix tests for case insensitive eSequenceIdMatcher tree | commitdiff
2016-05-31 gmungocJAL-2110 refactor + tests to allow a dbref version... tree | commitdiff
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example... tree | commitdiff
2016-05-30 gmungocJAL-1989 equals method strengthened to fully match... tree | commitdiff
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to... tree | commitdiff
2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain tree | commitdiff
2016-05-26 gmungocJAL-2113 additions to embl_mapping.xml / data models... features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-23 gmungocJAL-2113 remove spaces in sequence from unmarshalling... tree | commitdiff
2016-05-23 gmungocJAL-2114 save 'raw' ENA location as a sequence feature... tree | commitdiff
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove... tree | commitdiff
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2113_emblXml1.2 tree | commitdiff
2016-05-20 gmungocJAL-2114 explicit invalid test cases added tree | commitdiff
2016-05-20 gmungocJAL-2113 corrected test to use valid location syntax tree | commitdiff
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL... tree | commitdiff
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format tree | commitdiff
2016-05-20 gmungocJAL-2049 unit test updated for HGVS syntax, feature... tree | commitdiff
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests tree | commitdiff
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors tree | commitdiff
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue tree | commitdiff
2016-05-17 tcofoegbumerge tree | commitdiff
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated... tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-05-09 tcofoegbumerge tree | commitdiff
2016-05-09 tcofoegbuJAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin... tree | commitdiff
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature... tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case... tree | commitdiff
2016-05-03 gmungocJAL-2050 hide introns also when fetching Ensembl xrefs... tree | commitdiff
2016-05-02 Jim ProcterJAL-1270 move some Network tests to External (require... tree | commitdiff
2016-05-02 Jim ProcterJAL-1270 capitalise test groups tree | commitdiff
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop... tree | commitdiff
2016-04-29 tcofoegbumerge tree | commitdiff
2016-04-29 Jim ProcterJAL-192 need visible and actual sequence limits for... tree | commitdiff
2016-04-29 Jim ProcterJAL-192 fix bounds when no hidden regions, and when... tree | commitdiff
2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a seque... tree | commitdiff
2016-04-28 tcofoegbuJAL-1563 fixed failing tests for FTS Rest Client core tree | commitdiff
2016-04-27 tcofoegbuJAL-1563 Added Id (Uniprot Id) to the dynamic column... tree | commitdiff
2016-04-26 Jim ProcterJAL-2079 update GPL header for new Xfam tests tree | commitdiff
2016-04-26 Jim ProcterJAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network... tree | commitdiff
2016-04-26 tcofoegbuJAL-2071 improvement to get column data files as InputS... tree | commitdiff
2016-04-26 tcofoegbuJAL-2071 House keeping tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-25 tcofoegbudevelop merge tree | commitdiff
2016-04-25 tcofoegbuJAL-2071 added unit tests for FTSRestClient features/JAL-1563_uniprot-free-text-search tree | commitdiff
2016-04-24 Jim ProcterMerge branch 'JAL-2075_features_hiddeng' into develop tree | commitdiff
2016-04-24 Jim ProcterJAL-2075 test showing hidden columns bug in feature... tree | commitdiff
2016-04-24 Jim ProcterJAL-2075 refactor FeatureScoreModel to native testNG... tree | commitdiff
2016-04-23 Jim ProcterJAL-2075 findPosition for SeqCigar (with test) tree | commitdiff
2016-04-22 tcofoegbuJAL-2071 further refactoring, optimisation, and house... tree | commitdiff
2016-04-22 gmungocJAL-2068 code and test for case of minValue == maxValue tree | commitdiff
2016-04-22 gmungocJAL-2068 convenience helper method for graduated score... tree | commitdiff
2016-04-19 tcofoegbuJAL-2071 architectural improvement for Plugable Free... tree | commitdiff
2016-04-14 gmungocJAL-2041 add ID,clinical_significance to feature attrib... tree | commitdiff
2016-04-14 gmungocJAL-2041 clinical_significance shown on sequence featur... tree | commitdiff
2016-04-14 gmungocJAL-2049 revised computePeptideVariants to transfer... tree | commitdiff
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... tree | commitdiff
2016-04-14 gmungocJAL-653 test updated for 'use ID for description' tree | commitdiff
2016-04-13 Jim ProcterJAL-2046 test to demonstrate feature duplication bug tree | commitdiff
2016-04-13 Jim ProcterMerge branch 'bug/JAL-2046_ds_sharing_features_broken... tree | commitdiff
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test tree | commitdiff
2016-04-13 tcofoegbumerge tree | commitdiff
2016-04-13 tcofoegbuJAL-1270 Fixed failing tests due to race conditions... tree | commitdiff
2016-04-12 gmungocJAL-2049 separate protein variant per dna variant ... tree | commitdiff
2016-04-11 tcofoegbuJAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... tree | commitdiff
2016-04-08 Jim ProcterMerge branch 'feature/JAL-2050_intronhidden' into develop tree | commitdiff
2016-04-08 Jim ProcterJAL-2050 JAL-1722 new getSelectedRange() method to... tree | commitdiff
2016-04-06 tcofoegbumerge tree | commitdiff
2016-04-06 tcofoegbuJAL-1960 updated test to capture new behaviour improvement tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 RFC about cyclic dataset sequence references... tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 revise test for ambiguous case tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 ambiguous test for addSequenceFeature when... tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 RFC on addSequenceFeature behaviour after... tree | commitdiff
2016-04-05 Jim ProcterJAL-2046 test behaviour of copy constructor in differen... tree | commitdiff
2016-04-04 Jim ProcterJAL-2046 basic test to make sure any derived sequence... tree | commitdiff
2016-04-04 Jim ProcterJAL-2001 faster getMax/getMin selected column, with... tree | commitdiff
2016-04-01 gmungocJAL-1705 ensure the right mapping is used to align... tree | commitdiff
2016-04-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-04-01 gmungocJAL-2046 fix for broken test for deriveSequence tree | commitdiff
2016-04-01 gmungocJAL-1705 reworked AlignmentUtils.makeCdsAlignment and... tree | commitdiff
2016-04-01 gmungocJAL-653 updated test to match parsing of multi-valued... tree | commitdiff
2016-04-01 gmungocJAL-1705 tweak to MapList.toString for debugging tree | commitdiff
2016-04-01 gmungocJAL-1705 generalised getLength() to handle [start1... tree | commitdiff
2016-04-01 gmungocJAL-1705 test updated for canonicalised UNIPROT sequenc... tree | commitdiff
2016-04-01 gmungocJAL-2037 set DBRefEntry.version to "0" not "" in EMBL... tree | commitdiff
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms) tree | commitdiff
2016-03-28 tcofoegbuJAL-1919 Fixed broken test in DBRefUtilsTest tree | commitdiff
2016-03-23 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr... tree | commitdiff
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