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JAL-2754 Sequence.findFeatures(fromCol, toCol)
[jalview.git] / test /
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn tree | commitdiff
2017-06-01 gmungocJAL-2563 JAL-2547 amended unit tests for amended setSta... tree | commitdiff
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureL... tree | commitdiff
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-29 gmungocJAL-2526 Sequence.findPositions to get residue position... tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop tree | commitdiff
2017-05-27 Jim ProcterJAL-2563 failing test to verify SetStatus returns posit... task/JAL-2562_SequenceI.findPosition tree | commitdiff
2017-05-27 Jim ProcterJAL-2563 test to verify SetStatus returns -1 so mouseOv... tree | commitdiff
2017-05-27 Jim ProcterJAL-2547 JAL-2562 rejig SetStatusMessage return value... tree | commitdiff
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus... tree | commitdiff
2017-05-26 gmungocJAL-2480 move ContiguousI and Range to jalview.datamodel tree | commitdiff
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures tree | commitdiff
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... tree | commitdiff
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641... tree | commitdiff
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group... tree | commitdiff
2017-05-24 gmungocJAL-2505 make SequenceFeature type, begin, end, feature... tree | commitdiff
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to... tree | commitdiff
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end... tree | commitdiff
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters tree | commitdiff
2017-05-24 gmungocMerge branch 'bug/JAL-2541cutWithFeatures' into feature... tree | commitdiff
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift... tree | commitdiff
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 RNAAliFold result to annotation file roundtrip... features/JAL-2549_updateJABAWSto220 tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 skip ‘Unrecognised Service’ which resolves... tree | commitdiff
2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove... tree | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... tree | commitdiff
2017-05-23 gmungocJAL-2490 test coverage for printGffFormat before refact... tree | commitdiff
2017-05-23 gmungocJAL-2490 unit tests for getFeaturesForGroup tree | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... tree | commitdiff
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-22 gmungocJAL-2544 unit tests for sort by feature score tree | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... tree | commitdiff
2017-05-22 gmungocJAL-2490 add non-positional feature case to test prior... tree | commitdiff
2017-05-22 gmungocJAL-2480 always include all non-positional features... tree | commitdiff
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting tree | commitdiff
2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc tree | commitdiff
2017-05-18 gmungocJAL-2541 initial unit tests for edit cut relocate features tree | commitdiff
2017-05-18 gmungocJAL-2541 fix to initSeqFrom (and minor code tidy);... tree | commitdiff
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 tree | commitdiff
2017-05-16 gmungocJAL-2505 set helix number as feature group in SequenceF... tree | commitdiff
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring tree | commitdiff
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491 tree | commitdiff
2017-05-16 kiramtJAL-2491 Better merge tree | commitdiff
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-05-15 kiramtJAL-2491 Tests tree | commitdiff
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of... tree | commitdiff
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... tree | commitdiff
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-12 kiramtJAL-2491 Unit test updates tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... tree | commitdiff
2017-05-11 kiramtJAL-2491 Unit tests and updates tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... tree | commitdiff
2017-05-09 tcofoegbuJAL-2520 unit test for improvement to download structur... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... tree | commitdiff
2017-05-09 gmungocJAL-2403 use preferred factory method to create score... tree | commitdiff
2017-05-09 gmungocJAL-2480 include sequenceFeatureStore in createDatasetS... tree | commitdiff
2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null... tree | commitdiff
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512 tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... tree | commitdiff
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-03 Jim ProcterJAL-2503 AlignmentAnnotation.isQuantitative() test tree | commitdiff
2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-03 gmungocJAL-2246 basic sanity test of fetching example accessions tree | commitdiff
2017-05-03 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-03 gmungocJAL-2246 test a Uniprot fetch tree | commitdiff
2017-05-03 gmungocJAL-2485 JAL-2246 test Uniprot FTS summary tree | commitdiff
2017-05-02 Jim ProcterJAL-2424 fixme’s removed tree | commitdiff
2017-05-02 Jim ProcterJAL-2424 update assert to correct width for normalising... tree | commitdiff
2017-05-02 Jim ProcterJAL-2424 resolved, assert updated to pass (1f != 1d) tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-02 Jim ProcterMerge branch 'bug/JAL-2424getVisibleContigs' into develop tree | commitdiff
2017-05-02 gmungocJAL-2499 JAL-2403 push 'configure for view' inside... tree | commitdiff
2017-05-02 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-01 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
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