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JAL-2629 can now choose number of jackhmmer iterations
[jalview.git] / test /
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 dataset reference tests now in Functional... bug/JAL-3171_maintain_datasets_across_views tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 more complex project test - where sequences... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 failing test for legacy projects and fixing... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 failing test checking preservation of dataset tree | commitdiff
2018-12-14 Ben SoaresJAL-3130 single class testing on CLI with ant [ -Dclass... tree | commitdiff
2018-12-13 Ben SoaresJAL-3130 Fixing a few more tests that pass on a Mac... tree | commitdiff
2018-12-13 Ben SoaresJAL-3130 Attempting to fix 8 tests that pass on a Mac... tree | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... tree | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase tree | commitdiff
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview tree | commitdiff
2018-11-20 Jim ProcterJAL-3127 Sequence ID Colour and nominal spanish translation tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... tree | commitdiff
2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second... tree | commitdiff
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server tree | commitdiff
2018-11-05 Ben SoaresJAL-3141 Slightly improved message and more thorough... tree | commitdiff
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... tree | commitdiff
2018-10-25 gmungocJAL-3143 unit tests updated for code changes! tree | commitdiff
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles, tree | commitdiff
2018-10-23 gmungocJAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-10-05 gmungocJAL-1244 improved status message for insert/delete gap tree | commitdiff
2018-10-04 gmungocJAL-3132 status message for sequence and/or graph group... tree | commitdiff
2018-10-04 gmungocJAL-3093 unit tests, no mouse action over left/right... tree | commitdiff
2018-10-03 gmungocJAL-3093 tweaks to code and test for 3px gap above... tree | commitdiff
2018-10-02 gmungocJAL-3093 unit tests for SeqPanel.findMousePosition tree | commitdiff
2018-10-01 gmungocJAL-3093 refactor (+test) Annotation Labels tooltip... tree | commitdiff
2018-10-01 gmungocJAL-3093 unit tests for finding annotation row index... tree | commitdiff
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi... tree | commitdiff
2018-09-27 gmungocJAL-2791 new method to test if feature fails colour... tree | commitdiff
2018-09-27 gmungocJAL-2791 method that tests all conditions for feature... tree | commitdiff
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour tree | commitdiff
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature... tree | commitdiff
2018-09-19 gmungocJAL-3063 unit test for save/load project switched to... tree | commitdiff
2018-09-18 Jim ProcterJAL-3035 more dedasification tree | commitdiff
2018-09-17 gmungocJAL-3116 test method renamed to match code tree | commitdiff
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB tree | commitdiff
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor tree | commitdiff
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed... tree | commitdiff
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath... tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth tree | commitdiff
2018-09-05 Jim ProcterJAL-3065 don’t quote class path args for Runtime.exec... tree | commitdiff
2018-09-05 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception_nogroov... tree | commitdiff
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings tree | commitdiff
2018-09-03 gmungocMerge branch 'trialMerge' into releases/Release_2_10_5_... tree | commitdiff
2018-09-03 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of... tree | commitdiff
2018-09-03 Jim ProcterMerge branch 'bug/JAL-3065_DH_keyPair_Exception' into... tree | commitdiff
2018-08-31 Jim ProcterMerge branch 'bug/JAL-3061_RNA_secondary_structure_anno... tree | commitdiff
2018-08-28 gmungocJAL-3087 include full alignment height in repeating... tree | commitdiff
2018-08-16 gmungocJAL-3082 one more test condition bug/JAL-3082selectRegex tree | commitdiff
2018-08-16 gmungocJAL-3082 handle regex error, exclusive threshold, unit... tree | commitdiff
2018-08-10 gmungocJAL-3076 refactor for more efficient scan of 'gene... tree | commitdiff
2018-08-10 gmungocJAL-3076 fetch Ensembl sequence as JSON instead of... tree | commitdiff
2018-08-03 Ben SoaresJAL-3061 tree | commitdiff
2018-08-02 Ben SoaresJAL-3053 tree | commitdiff
2018-07-31 bsoaresStockholm file for test tree | commitdiff
2018-07-18 Jim ProcterMerge branch 'features/mchmmer' into features/mchmmer_m... features/mchmmer_merge_JAL-1950 tree | commitdiff
2018-07-17 bsoaresJAL-3065 tree | commitdiff
2018-06-29 gmungocJAL-3049 JAL-2069 colour icon tooltip including by... tree | commitdiff
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more ! tree | commitdiff
2018-06-07 gmungocJAL-2920 format/comment tidy tree | commitdiff
2018-06-07 gmungocJAL-2920 wrap description in <html/> if it includes... tree | commitdiff
2018-06-06 gmungocJAL-2920 unit tests for 3 or more original or variant... tree | commitdiff
2018-06-06 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... tree | commitdiff
2018-06-06 Jim ProcterJAL-2920 don’t output variant/original sequence as... tree | commitdiff
2018-06-06 Jim ProcterJAL-1920 JAL-3017 use newline not <br/> in description... tree | commitdiff
2018-06-05 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed... tree | commitdiff
2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList tree | commitdiff
2018-06-04 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... tree | commitdiff
2018-06-02 Jim ProcterJAL-3017 parse multiple variant elements for uniprot... tree | commitdiff
2018-05-31 Jim ProcterMerge branch 'spike/JAL-1950_hmmer3client' into feature... tree | commitdiff
2018-05-31 Jim ProcterMerge branch 'develop' into spike/JAL-1950_hmmer3client tree | commitdiff
2018-05-29 gmungocJAL-3005 refactor updateRecentlyOpened to enable reuse tree | commitdiff
2018-05-29 Mungo CarstairsJAL-2994 utility method to match a list of folder/file... tree | commitdiff
2018-05-28 gmungocJAL-2994 use pattern matches to search for chimera.exe tree | commitdiff
2018-05-28 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-05-24 gmungocJAL-2997 additional tests tree | commitdiff
2018-05-23 gmungocJAL-2997 unit test tree | commitdiff
2018-05-21 gmungocJAL-2920 use HGVS notation for protein variant feature tree | commitdiff
2018-05-14 gmungocJAL-2711 removed unused and flaky utility method tree | commitdiff
2018-05-11 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates tree | commitdiff
2018-05-11 gmungocJAL-2986 failing test added tree | commitdiff
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into... tree | commitdiff
2018-05-10 Jim ProcterJAL-2920 basic test for Description from features with... tree | commitdiff
2018-05-08 gmungocMerge branch 'develop' into features/mchmmer tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 patch test to ensure structures are actually... patch/JAL-2321_addsecstrForDroppedPDBFile tree | commitdiff
2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun tree | commitdiff
2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-05-07 gmungocJAL-1767 unit test for save and restore PCA features/JAL-1767pcaInProject tree | commitdiff
2018-05-07 Jim ProcterJAL-2906 apply GPLv3 license source tree | commitdiff
2018-05-04 gmungocJAL-2965 graduate brightness on z-axis from centre... tree | commitdiff
2018-05-01 gmungocJAL-1767 include d and e vectors in Matrix.copy() tree | commitdiff
2018-04-30 gmungocJAL-2965 graduated sequence point colour from back... tree | commitdiff
2018-04-27 gmungocJAL-1767 refactoring and tidying of RotatableCanvas... tree | commitdiff
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