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JAL-4241 add SeqsetUtils.filterSequence function
2023-09-14 Mateusz WarownyJAL-4241 add SeqsetUtils.filterSequence function
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2023-09-12 Mateusz WarownyJAL-4241 Fix non-standard residues replacement.
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2023-09-11 Mateusz WarownyMerge branch 'mmw/bug/JAL-4241-annotation-alignment...
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2023-09-11 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into...
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2023-09-11 Mateusz WarownyMerge branch 'improvement/JAL-4245-return-null-from...
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2023-09-08 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into...
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2023-09-08 Mateusz WarownyJAL-4199 Set all setup methods to alwaysRun
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2023-09-08 Mateusz WarownyJAL-4199 Add tests to the "Functional" group
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2023-08-04 Mateusz WarownyJAL-4241 Test sequences prepared for annotation job
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2023-07-31 Mateusz WarownyJAL-4241 Fix annotation and feature alignment with...
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2023-07-28 Mateusz WarownyJAL-4241 Create sequence mapping before adjusting annotations
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2023-07-26 Mateusz WarownyJAL-4245 Test getRootDataset method
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2023-07-26 Mateusz WarownyJAL-4245 Return null from getRootDataset if no dataset
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2023-07-19 Mateusz WarownyJAL-4199 Add tests to the "Functional" group
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2023-07-18 Mateusz WarownyMerge branch 'patch/JAL-4232-disable-unavailable-services...
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2023-07-18 Mateusz WarownyMerge branch 'mmw/JAL-4199-task-execution-update' into...
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2023-07-18 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into...
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2023-07-17 Mateusz WarownyJAL-4232 Disable menu items for RNA services for proteins.
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2023-07-14 Mateusz WarownyMerge branch 'feature/JAL-3954-ebi-phmmer' into mmw...
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2023-07-12 Mateusz WarownyJAL-4199 Fix cancel button not appearing on progress bar
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2023-07-12 Mateusz WarownyJAL-4199 Restore deletable test when removing workers
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2023-07-12 Mateusz WarownyJAL-4199 Remove viewport reference from AnnotationTask
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2023-07-12 Mateusz WarownyJAL-4199 Fix slivka client to parse feature fileters
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2023-07-12 Mateusz WarownyJAL-4199 remove viewport references from AlignmentTask
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2023-07-12 Mateusz WarownyJAL-4199 Fix interactive jobs not being stopped
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2023-07-12 Mateusz WarownyJAL-4199 Organise AlignCalcWorkerAdapter imports
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2023-07-12 Mateusz WarownyJAL-4199 Implement toString in BaseTask
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2023-07-12 Mateusz WarownyJAL-4199 Organise annotation task imports and fields
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2023-07-12 Mateusz WarownyJAL-4199 Set initial delay of task executor to 0
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2023-07-12 Mateusz WarownyJAL-4199 Remove commented out code
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2023-07-12 Mateusz WarownyJAL-4199 Perform null check for annotation sequenceRef
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2023-07-12 Mateusz WarownyJAL-4199 Patch task execution in action tests
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2023-07-12 Mateusz WarownyJAL-4199 Remove utility methods moved to other classes...
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2023-07-12 Mateusz WarownyImplement getRootDatasetSequence for SequenceI
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2023-07-12 Mateusz WarownyImplement getLastGraphGroup in for AnnotatedCollectionI
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2023-07-12 Mateusz WarownyJAL-4199 Schedule tasks for execution from MenuManager
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2023-07-12 Mateusz WarownyJAL-4199 Tidy up imports
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2023-07-12 Mateusz WarownyJAL-4199 Update gui handler for annotation tasks
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2023-07-12 Mateusz WarownyJAL-4199 Implement AlignCalcWorker adapter for annot...
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2023-07-12 Mateusz WarownyJAL-4199 Fix method name typo
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2023-07-12 Mateusz WarownyJAL-4199 Make all TaskEventListener methods default
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2023-07-12 Mateusz WarownyJAL-4199 Remove taskRestarted from task events
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2023-07-12 Mateusz WarownyJAL-4199 Allow multiple listeners in TaskEventSupport
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2023-07-12 Mateusz WarownyJAL-4199 Change actions to be task factories
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2023-07-12 Mateusz WarownyJAL-4199 Replace AbstractPollingTask with BaseTask
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2023-06-22 Mateusz WarownyJAL-4199 Introduce AlignmentAction tests
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2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED
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2023-06-19 Mateusz WarownyJAL-4199 Test basic service parameter construction
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2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery
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2023-06-14 Mateusz WarownyJAL-4199 Update slivka client
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2023-06-02 Mateusz WarownyJAL-3954 Do not retrieve alignment for failed jobs
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2023-06-02 Mateusz WarownyJAL-3954 Report error log when job fails
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2023-06-02 Mateusz WarownyJAL-3954 Add query sequence aligned to consensus to...
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2023-06-02 Mateusz WarownyJAL-3954 reuse spinner dialog to show search task status
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2023-05-30 Mateusz WarownyJAL-3954 create primitive gui handler for search service
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2023-05-16 Mateusz WarownyJAL-3954 Implement phmmer action and task as alignment...
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2023-05-16 Mateusz WarownyJAL-3954 Log events TaskEventListener.NULL_LISTENER
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2023-05-10 Mateusz WarownyJAL-3954 Create fallback for handling unknown actions
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2023-05-10 Mateusz WarownyJAL-3954 Register AlignFrame as web service change...
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2023-05-10 Mateusz WarownyJAL-3954 Implement job dispatcher service discoverer
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2023-05-10 Mateusz WarownyJAL-3954 Implement NullAction and NullTask for testing...
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2023-05-10 Mateusz WarownyJAL-3954 Fix typo in error message
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2023-05-08 Mateusz WarownyJAL-3954 Update hmmer client lib, testEndpoint added
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2023-05-08 Mateusz WarownyJAL-3954 Implement proxy ws client for phmmer
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2023-05-08 Mateusz WarownyJAL-3954 Add client libraries for phmmer and j2s http
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2023-05-08 Mateusz WarownyJAL-3954 Create getters for Credentials record
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2023-05-08 Mateusz WarownyJAL-3954 Add value parsers for double, int and bool...
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2023-05-08 Mateusz WarownyJAL-3954 Create ParamDatastore builder for phmmer
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2023-04-24 Mateusz WarownyJAL-4155 Replace unsafe casting to AlignmentPanel with...
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2023-03-28 Mateusz WarownyJAL-4154 Remove not-bamboo flag from testGetVisibleWidth
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2023-03-28 Mateusz WarownyJAL-4154 Update AlignmentPanelTest to use new forArch...
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2023-03-28 Mateusz WarownyJAL-4154 Add Platform.forArch method.
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2023-03-28 Mateusz WarownyMerge branch 'JAL-4152-typed-singleton-provider' into...
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2023-03-28 Mateusz WarownyMerge branch 'development/Release_2_12_Branch' into...
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2023-03-24 Mateusz WarownyJAL-4152 Remove redundant casts from getInstance usages.
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2023-03-22 Mateusz WarownyJAL-4152 Make return type of getInstance a generic...
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2023-03-17 Mateusz WarownyJAL-4146 Fix SeqCanvasTest setup
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2023-03-15 Mateusz WarownyJAL-4146 Change occurrences of <br/> to <br>
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2023-03-14 Mateusz WarownyJAL-4146 Patch parseColourString test to expect null...
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2023-03-01 Mateusz WarownyJAL-4136 Replace uses of isBlank with isEmpty
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2023-02-24 Mateusz WarownyJAL-4135 replace stream.toString(Charset) calls with...
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2023-02-22 Mateusz WarownyJAL-4130 Replace Collection#forEach call with for loop
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2023-02-22 Mateusz WarownyJAL-4130 Avoid using thenComparing of the Comparator...
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2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse
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2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables...
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2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console
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2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_2_12_...
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2022-12-12 Mateusz WarownyWIP
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2022-04-26 Mateusz WarownyJAL-3878 Implement RNA Sec. Str. Pred. discovery for...
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2022-04-25 Mateusz WarownyJAL-3878 log full worker repr in AlignCalcManager
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2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard...
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2022-04-11 Mateusz WarownyJAL-3878 Use slivka client's URL when building web...
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2022-04-11 Mateusz WarownyJAL-3878 Add conservation service discovery
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2022-04-11 Mateusz WarownyJAL-3878 Build interactive services menu
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2022-04-11 Mateusz WarownyJAL-3878 Implement prot. seq. an. discovery for slivka.
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2022-04-11 Mateusz WarownyJAL-3878 Implement gui elements for annotation servicces
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2022-04-11 Mateusz WarownyJAL-3878 Create SlivkaAnnotationWSClient
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2022-04-11 Mateusz WarownyJAL-3878 Add full name getter to ActionI
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2022-04-11 Mateusz WarownyJAL-3878 Log status changes in annotation task
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2022-04-11 Mateusz WarownyJAL-3878 Allow null value for action name
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