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2017-09-26	kiramt	JAL-2674 more List<int[]> -> HiddenColumns copy changes	commit \| commitdiff \| tree
2017-09-26	kiramt	JAL-2674 Unit test for new copy constructor.	commit \| commitdiff \| tree
2017-09-26	kiramt	JAL-2674 Changes to pasting	commit \| commitdiff \| tree
2017-09-26	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2740'...	commit \| commitdiff \| tree
2017-09-26	kiramt	JAL-2740 additional unit testing	commit \| commitdiff \| tree
2017-09-26	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2740'...	commit \| commitdiff \| tree
2017-09-26	kiramt	JAL-2740 removed unwanted code, added unit test	commit \| commitdiff \| tree
2017-09-26	kiramt	JAL-2674 HiddenColumns interface tidies	commit \| commitdiff \| tree
2017-09-26	kiramt	JAL-2647 Added iterators and associated tests and benchmarks	commit \| commitdiff \| tree
2017-09-22	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2739'...	commit \| commitdiff \| tree
2017-09-22	kiramt	JAL-2739 Fix ported to 2.10.3	commit \| commitdiff \| tree
2017-09-22	kiramt	JAL-2674 add bounds to findHiddenRegionPositions	commit \| commitdiff \| tree
2017-09-21	kiramt	JAL-2674 Made gui ScalePanel reveal menus consistent...	commit \| commitdiff \| tree
2017-09-21	kiramt	JAL-2674 unit test for gapBitSet	commit \| commitdiff \| tree
2017-09-21	kiramt	JAL-2674 Rewrote propagateInsertions	commit \| commitdiff \| tree
2017-09-21	kiramt	JAL-2674 Reset tests	commit \| commitdiff \| tree
2017-09-20	kiramt	JAL-2674 fix up interface of locateVisibleBoundsOfSequence	commit \| commitdiff \| tree
2017-09-20	kiramt	JAL-2674 Transferred updated unit tests from first...	commit \| commitdiff \| tree
2017-09-20	kiramt	JAL-2662 Adjustments to hidden columns benchmark	commit \| commitdiff \| tree
2017-09-19	kiramt	JAL-2662 Updated README	commit \| commitdiff \| tree
2017-09-19	kiramt	JAL-2737 Checkstyle error fixes	commit \| commitdiff \| tree
2017-09-19	kiramt	JAL-2622 Tidied up gitignore, added to README	commit \| commitdiff \| tree
2017-09-19	kiramt	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-09-19	kiramt	Merge remote-tracking branch 'origin/task/JAL-2662...	commit \| commitdiff \| tree
2017-09-06	kiramt	JAL-2587 Removed dissolve	commit \| commitdiff \| tree
2017-09-05	kiramt	JAL-2722 unit test	commit \| commitdiff \| tree
2017-09-05	kiramt	JAL-2722 Reinstate allGroups value setting in getResidueColour	commit \| commitdiff \| tree
2017-09-04	kiramt	JAL-2673 turn off update to running flag from scrollUp...	commit \| commitdiff \| tree
2017-09-04	kiramt	JAL-2673 Attempt to stop infinite scrolling etc	commit \| commitdiff \| tree
2017-09-04	kiramt	JAL-2611 reinstated missed commit	commit \| commitdiff \| tree
2017-09-01	kiramt	JAL-2527 Additional test	commit \| commitdiff \| tree
2017-09-01	kiramt	JAL-2527 Unit test for group colouring	commit \| commitdiff \| tree
2017-08-31	kiramt	JAL-2527 Unit test	commit \| commitdiff \| tree
2017-08-31	kiramt	JAL-2527 Fix typo	commit \| commitdiff \| tree
2017-08-31	kiramt	JAL-2527 Updated Spanish, adjusted UI so Spanish fits	commit \| commitdiff \| tree
2017-08-31	kiramt	JAL-2527 Updates following code review	commit \| commitdiff \| tree
2017-08-30	kiramt	JAL-2527 Code comments, tidy	commit \| commitdiff \| tree
2017-08-30	kiramt	JAL-2527 Added default setting/resetting and first...	commit \| commitdiff \| tree
2017-08-30	kiramt	JAL-2527 Wired up cached values to overview	commit \| commitdiff \| tree
2017-08-30	kiramt	Merge remote-tracking branch 'origin/feature/2588'...	commit \| commitdiff \| tree
2017-08-30	kiramt	Merge branch 'feature/JAL-2664' into feature/JAL-2527	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2664 Updates following review	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2527 Added overview prefs - don't get picked up...	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2665 OOM checks just in case	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2665 OOM checks just in case	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2665 OOM check	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2665 ported fix to 2.10.3. Doesn't work.	commit \| commitdiff \| tree
2017-08-29	kiramt	JAL-2665 Corrected to draw selections for wrapped printing	commit \| commitdiff \| tree
2017-08-28	kiramt	JAL-2527 Started adding overview preferences	commit \| commitdiff \| tree
2017-08-28	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-08-28	kiramt	Merge remote-tracking branch 'origin/releases/Release_2_10_2...	commit \| commitdiff \| tree
2017-08-28	kiramt	JAL-2665 Changes for review comments; printing with...	commit \| commitdiff \| tree
2017-08-25	kiramt	JAL-2587 Removed duplicate events fired to progress bar	commit \| commitdiff \| tree
2017-08-25	kiramt	JAL-2587 Removed annoying double repaint on hide insertions	commit \| commitdiff \| tree
2017-08-25	kiramt	JAL-2587 Update overview progress bar while drawing...	commit \| commitdiff \| tree
2017-08-25	kiramt	JAL-2587 Progress bar sizing tweaks	commit \| commitdiff \| tree
2017-08-25	kiramt	JAL-2587 Made progress bar display before overview...	commit \| commitdiff \| tree
2017-08-18	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2664 Adjusted colour of hidden cols/seqs	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2664 Correct colouring for rows	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2662 Tidy	commit \| commitdiff \| tree
2017-08-18	kiramt	Merge branch 'develop' into task/JAL-2662	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2662 First benchmark running	commit \| commitdiff \| tree
2017-08-18	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2665 Comments	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2665 Refactoring (and side-effect fix for JAL-2672)	commit \| commitdiff \| tree
2017-08-18	kiramt	JAL-2665 tidies	commit \| commitdiff \| tree
2017-08-17	kiramt	JAL-2665 Code tidies	commit \| commitdiff \| tree
2017-08-17	kiramt	JAL-2665 Fixed wrapped mode group over >1 panel; and...	commit \| commitdiff \| tree
2017-08-17	kiramt	JAL-2665 partial fix for selection running over 2 wrapped...	commit \| commitdiff \| tree
2017-08-17	kiramt	JAL-2665 Correct position of selection switching from...	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2665 Working with hidden columns	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2665 Added hidden columns group selection - almost...	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2665 Selecting on wrapped alignments	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2556 start to account for wrapped alignments	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2665 Tidy	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2665 fix resize	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2556 Code tidy	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2556 Resolved group update on colouring and escape	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2665 Added sequence group update event.	commit \| commitdiff \| tree
2017-08-16	kiramt	JAL-2665 Draw selection group - works on scroll but...	commit \| commitdiff \| tree
2017-08-15	kiramt	JAL-2265 turn off NPE	commit \| commitdiff \| tree
2017-08-14	kiramt	JAL-2664 Initial change to drawing hidden regions in...	commit \| commitdiff \| tree
2017-08-11	kiramt	JAL-2662 First attempt to set up JMH hidden columns...	commit \| commitdiff \| tree
2017-08-10	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-08-10	kiramt	JAL-2587 tidy	commit \| commitdiff \| tree
2017-08-10	kiramt	JAL-2587 Tinkering with progress panel appearance	commit \| commitdiff \| tree
2017-08-10	kiramt	JAL-2587 prevented double overview recalc on opening...	commit \| commitdiff \| tree
2017-08-09	kiramt	JAL-2587 Adjusting height for progress bar	commit \| commitdiff \| tree
2017-08-09	kiramt	JAL-2587 fiddling with dimensions	commit \| commitdiff \| tree
2017-08-09	kiramt	JAL-2587 Keep progress bar panel in position regardless...	commit \| commitdiff \| tree
2017-08-08	kiramt	JAL-2587 tidies	commit \| commitdiff \| tree
2017-08-08	kiramt	JAL-2587 Added progress bar to overview. Not fully...	commit \| commitdiff \| tree
2017-08-04	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-08-04	kiramt	JAL-2587 First working effort	commit \| commitdiff \| tree
2017-08-03	kiramt	JAL-2587 Attempt to add timed dissolve	commit \| commitdiff \| tree
2017-07-31	kiramt	JAL-2634 Make overview box full height when alignment...	commit \| commitdiff \| tree
2017-07-31	kiramt	JAL-2634 Added null test for graphics in AnnotationPanel...	commit \| commitdiff \| tree
2017-07-28	kiramt	JAL-2632 Added paintAlignment(true) to show cols code	commit \| commitdiff \| tree
2017-07-28	kiramt	JAL-2587 First working attempt	commit \| commitdiff \| tree
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