git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
update release branch to v2.8
2012-10-03 jprocterupdate release branch to v2.8
 commit | commitdiff | tree
2012-10-03 jprocterformatting
 commit | commitdiff | tree
2012-10-03 jprocterJAL-1026 - insert a sensible default for proxy so Jalview...
commit | commitdiff | tree
2012-10-03 jprocterJAL-1183 JAL-343 - use dialog queue for JABA warning...
commit | commitdiff | tree
2012-10-02 jprocterJAL-1185 patch NPE - create new group for subtree on...
commit | commitdiff | tree
2012-10-01 jprocterJAL-1130 JAL-1137 messy hardcoding of author list to...
commit | commitdiff | tree
2012-10-01 jprocterJAL-1130 JAL-1139 hardcode preferred height to logo...
commit | commitdiff | tree
2012-10-01 jprocterJAL-1130 more robust loading code and different logos...
commit | commitdiff | tree
2012-10-01 jprocterJAL-1183 dialog thread is only started after the splashscree...
commit | commitdiff | tree
2012-10-01 jprocterJAL-1111 dialog flickers whilst example file starts...
commit | commitdiff | tree
2012-10-01 jprocterJAL-1184 apparent deadlock when launching jalview on...
commit | commitdiff | tree
2012-10-01 jprocterJAL-1183 showNews adds news discovery and display thread...
commit | commitdiff | tree
2012-10-01 jprocterJAL-1183 use dialog queue for usage statistics prompt
 commit | commitdiff | tree
2012-10-01 jprocterJAL-1183 dialog queue
 commit | commitdiff | tree
2012-09-27 jprocterJAL-1030 patch typo
 commit | commitdiff | tree
2012-09-27 jprocterJAL-1179 - regression from JAL-1030 patch implicitly...
commit | commitdiff | tree
2012-09-25 jprocterJAL-1031 allow empty selections to pass through to...
commit | commitdiff | tree
2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when...
commit | commitdiff | tree
2012-09-25 jprocterJAL-1031 JAL-1032 if selection is non-null but empty...
commit | commitdiff | tree
2012-09-25 jprocterJAL-1010 write validated value back to text field to...
commit | commitdiff | tree
2012-09-25 jprocterJAL-970 JAL-1052 (comment about JAL-1140)
 commit | commitdiff | tree
2012-09-25 jprocterJAL-970 document interactive RNA secondary structure...
commit | commitdiff | tree
2012-09-25 jprocterJAL-1173 - trap redraw buffer OOM errors. needs a test...
commit | commitdiff | tree
2012-09-25 jprocterJAL-1173 try to catch OOMs when loading annotation...
commit | commitdiff | tree
2012-09-25 jprocterJAL-1076 add note in documentation about Alt rather...
commit | commitdiff | tree
2012-09-24 jprocterJAL-1130 transparent big version for JNLP and file...
commit | commitdiff | tree
2012-09-24 jprocterJAL-958 revised applet parameter documentation to standardis...
commit | commitdiff | tree
2012-09-24 jprocterformatting
 commit | commitdiff | tree
2012-09-24 jprocterJAL-958 normalise logo menu options in applet
 commit | commitdiff | tree
2012-09-24 jprocterJAL-958 enable logo display when normalise option selected
 commit | commitdiff | tree
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme...
commit | commitdiff | tree
2012-09-24 jprocteronly recalc group conservation after last sequence...
commit | commitdiff | tree
2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme...
commit | commitdiff | tree
2012-09-24 jprocterJAL-958 JAL-966 refactor group/alignment associated...
commit | commitdiff | tree
2012-09-24 jprocterJAL-1130 remove lossy logo versions
 commit | commitdiff | tree
2012-09-21 jprocterMerge branch 'JAL-1130' into develop
 commit | commitdiff | tree
2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to...
commit | commitdiff | tree
2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global...
commit | commitdiff | tree
2012-09-21 jprocterJAL-1165 visual delay whilst results are processed.
 commit | commitdiff | tree
2012-09-21 jprocterJAL-1165 allow progress indicators on the web service...
commit | commitdiff | tree
2012-09-21 jprocterJAL-1130 jalview spinning icon for web service dialog
 commit | commitdiff | tree
2012-09-21 jprocterJAL-1130 splashscreen logo
 commit | commitdiff | tree
2012-09-19 jprocterJAL-1130 new logo in help, splash screen and web services...
commit | commitdiff | tree
2012-09-19 jprocterJAL-1130 new logo spinner in webservices status window
 commit | commitdiff | tree
2012-09-19 jprocterJAL-1130 large logo
 commit | commitdiff | tree
2012-09-19 jprocterJAL-1130 small rotating logo
 commit | commitdiff | tree
2012-09-19 jprocterJAL-1130 made SplashScreen able to be a dialog that...
commit | commitdiff | tree
2012-09-19 jprocterJAL-1130 refactored standard hyperlink handler code...
commit | commitdiff | tree
2012-09-19 jprocterJAL-1130 trial view of new logo on splashscreen.
 commit | commitdiff | tree
2012-09-19 jprocterJAL-1170 column and row positions confused in implementation...
commit | commitdiff | tree
2012-09-07 jproctertodos
 commit | commitdiff | tree
2012-09-06 jprocterJAL-1065 documentation and image
 commit | commitdiff | tree
2012-09-06 jprocterJAL-958
 commit | commitdiff | tree
2012-09-06 jprocterJAL-842 documentation
 commit | commitdiff | tree
2012-09-06 jprocter2.7.1 squashed
 commit | commitdiff | tree
2012-09-06 jproctertypo
 commit | commitdiff | tree
2012-09-06 jprocterJAL-1065 whats new entry for tcoffee scores
 commit | commitdiff | tree
2012-09-06 jprocterfix image link
 commit | commitdiff | tree
2012-09-06 jprocterJAL-958 documented logo menu items
 commit | commitdiff | tree
2012-09-06 jproctermerge new 2.7.1 and 2.8 features into one
 commit | commitdiff | tree
2012-09-06 jproctertypo
 commit | commitdiff | tree
2012-09-06 jprocterJAL-958 flag indicating if visualization settings for...
commit | commitdiff | tree
2012-09-06 jprocterJAL-958 store/recover normalised flag
 commit | commitdiff | tree
2012-09-06 jprocterJAL-958 store normalised flag in jalview project
 commit | commitdiff | tree
2012-09-06 jprocterPCA what's new and score matrix documentation page
 commit | commitdiff | tree
2012-09-06 jprocterJAL-1013 JAL-1167 JAL-1121 JAL-1125
 commit | commitdiff | tree
2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA...
commit | commitdiff | tree
2012-09-06 jprocterJAL-1013 - employ index parameter rather than hardcode...
commit | commitdiff | tree
2012-09-06 jprocterJAL-1167 method and simple tests for printing score...
commit | commitdiff | tree
2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition
 commit | commitdiff | tree
2012-09-05 jprocterJAL-1136 give pre-existing custom settings a special...
commit | commitdiff | tree
2012-09-05 jprocterformatting
 commit | commitdiff | tree
2012-09-05 jprocterpatch for NPE when no services are available to resolve...
commit | commitdiff | tree
2012-09-05 jprocterJAL-975 null any existing preset if user has supplied...
commit | commitdiff | tree
2012-09-05 jprocterJAL-1162 catch security exception and just use bare...
commit | commitdiff | tree
2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run
 commit | commitdiff | tree
2012-09-05 jprocterJAL-1111 allow news reader window to be moved even...
commit | commitdiff | tree
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
 commit | commitdiff | tree
2012-09-04 jproctertypo
 commit | commitdiff | tree
2012-09-04 jprocterJAL-976 documentation for disorder, AACon, ClustalO...
commit | commitdiff | tree
2012-09-04 jprocterJAL-975 note about black colouring bug
 commit | commitdiff | tree
2012-09-04 jprocterJAL-1066 documentation for per-sequence annotation...
commit | commitdiff | tree
2012-09-04 jprocterJAL-1060 new dialog box image
 commit | commitdiff | tree
2012-09-04 jprocterJAL-1060 documentation for new layout
 commit | commitdiff | tree
2012-09-04 jprocteroff by one for sequence associated annotation
 commit | commitdiff | tree
2012-09-04 jprocterunused variable
 commit | commitdiff | tree
2012-09-04 jprocterJAL-974 JRonn thresholds
 commit | commitdiff | tree
2012-09-03 jprocterJAL-591 adapt option layout to width of dialog box
 commit | commitdiff | tree
2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after...
commit | commitdiff | tree
2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotation...
commit | commitdiff | tree
2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor
 commit | commitdiff | tree
2012-09-03 jprocterJAL-1111 news reader shouldn't be modal.
 commit | commitdiff | tree
2012-09-03 jprocterJAL-1111 doh - helps if you pass modality flag onto...
commit | commitdiff | tree
2012-09-02 jprocterJAL-812 only trigger alignment redraw and calculation...
commit | commitdiff | tree
2012-09-02 jprocterJAL-1007 refactored code and patched calculation bug
 commit | commitdiff | tree
2012-09-02 jprocterJAL-1015 documentation for basic HTML sequence annotation...
commit | commitdiff | tree
2012-09-02 jprocterJAL-1075 JAL-1062 documentation and new figure for...
commit | commitdiff | tree
2012-09-02 jprocterJAL-1158 - request focus after opening window.
 commit | commitdiff | tree
2012-09-02 jprocterJAL-659 cope with case insensitive accessions by forcing...
commit | commitdiff | tree
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved...
commit | commitdiff | tree
next