| 2007-02-02 |
amwaterhouse | LookandFeel must be set in headless state as window...
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | removed deprecated bits
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | find colours uncommented
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | sequence.getStart() in findTrueIndex
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | get fontmetrics from pg
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Dont add null tooltip
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | New description
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | tooltips
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | set description for groups
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Doesnt move with mouse, friendlier for mac users
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Dont repaint tooltip
|
commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | One class for edit name/description
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | slightly larger window edit name/desc
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | edit annotation name/description
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Can edit annotation name/description
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Consensus, conservation, quality labels may have changed
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | aligned not used
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Dont export annotations if not visible
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Unique name for new group and treegroup
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Adjust features when cutting and pasting
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | make new dataset seq if residues deleted
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | copy feature: check for null values
|
commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | aligned not used
|
commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Check valid residues in ss
|
commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Check seqs in group exist in this alignment
|
commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Any character non aa or nucleotide is a space
|
commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | moved painting routine
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | consensusColouring never used
|
commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Draw helices correctly
|
commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Use util toHexString
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Output groups in annotation file
|
commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Dont clear graphics g before drawing the image
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Image for labels, stops flickering
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | New view copies annotations across
|
commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Tooltips for group names, descriptions
|
commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Description added
|
commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | SequenceGroup parsing added to annotation file
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | ID_ITALICS option in preferences
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | scaleAbove, left and right set when tab selection changes
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Marios annotation bug fixed
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | AnnotationId is hashcode of object
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | Only set the sequence oncecvs diff datamodel/Alignment...
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | Adjusts annotations for sequence edits
|
commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | If its null, set tip empty
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Command takes alignment, not gapChar
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Annotations move when full alignment edited
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Annotation adjustment moved to EditCommand
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Remove unneccessary lines
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | AlignmentAnnotations require id
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Allow for hidden columns
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Only output visible annotations
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | load/get Annotation
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Remove unnecessary line
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Output annotations
|
commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | 1.1 enabled
|
commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | Conservation etc have autoCalculated flag set true
|
commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | AdjustAnnotations needs position, number and insert
|
commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | This constructor is never called
|
commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | Features output for javascript
|
commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | output now takes alignment, not just sequences
|
commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | Extension to fastaFile for myhits
|
commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | Page setup added
|
commit | commitdiff | tree |
| 2007-01-23 |
amwaterhouse | boolean for internal copies
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commit | commitdiff | tree |
| 2007-01-23 |
amwaterhouse | Hidden representatives moved from sequence to viewport
|
commit | commitdiff | tree |
| 2007-01-19 |
amwaterhouse | export features/annotations not for import
|
commit | commitdiff | tree |
| 2007-01-19 |
amwaterhouse | Applet can output and load annotations, features
|
commit | commitdiff | tree |
| 2007-01-19 |
amwaterhouse | Neeed to know protocol for annotation loading
|
commit | commitdiff | tree |
| 2007-01-19 |
amwaterhouse | Need to know protocol to load anntotations
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Add the last sequence before annotations
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Take scrollOffset into account
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Tool tip for annotation description
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Set description on copy
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Set tooltip
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | 1.1 enabled
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | put vamsas bit back in
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | File Parsing returns Alignments, not Sequence[]
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Is secondary structure label modified
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Display description
|
commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Descriptions can be added to annotations
|
commit | commitdiff | tree |
| 2007-01-17 |
amwaterhouse | Edit name/description added to applet
|
commit | commitdiff | tree |
| 2007-01-17 |
amwaterhouse | Fit to Window bug fixed
|
commit | commitdiff | tree |
| 2007-01-17 |
amwaterhouse | Dont set the font of alignFrameMenubarcvs update appletgui...
|
commit | commitdiff | tree |
| 2007-01-04 |
amwaterhouse | Send new sequences when firing alignment changed
|
commit | commitdiff | tree |
| 2007-01-04 |
amwaterhouse | Reads in anything following seq id as a description
|
commit | commitdiff | tree |
| 2007-01-04 |
amwaterhouse | HEADER and ATOM must be position 0
|
commit | commitdiff | tree |
| 2006-12-21 |
amwaterhouse | check on sequence length
|
commit | commitdiff | tree |
| 2006-12-21 |
amwaterhouse | getSequenceAsString
|
commit | commitdiff | tree |
| 2006-12-21 |
amwaterhouse | getSequenceAsString
|
commit | commitdiff | tree |
| 2006-12-21 |
amwaterhouse | remove unnecessary import
|
commit | commitdiff | tree |
| 2006-12-19 |
amwaterhouse | org.vamsas is now uk.ac.vamsas
|
commit | commitdiff | tree |
| 2006-12-19 |
amwaterhouse | description may be null
|
commit | commitdiff | tree |
| 2006-12-14 |
amwaterhouse | set sequence_ref alignment
|
commit | commitdiff | tree |
| 2006-12-14 |
amwaterhouse | Watch out for - symbol lin jnet files
|
commit | commitdiff | tree |
| 2006-12-14 |
amwaterhouse | Are the labels all secondary Strutures? are the displayChars...
|
commit | commitdiff | tree |
| 2006-12-14 |
amwaterhouse | one less cast
|
commit | commitdiff | tree |
| 2006-12-11 |
amwaterhouse | ensure lastSeq is refreshed if new feature added
|
commit | commitdiff | tree |
| 2006-12-07 |
amwaterhouse | set labels null if not being used
|
commit | commitdiff | tree |
| 2006-12-07 |
amwaterhouse | dont add char[] ref to a string
|
commit | commitdiff | tree |
| 2006-12-06 |
amwaterhouse | protected ok
|
commit | commitdiff | tree |
| 2006-12-06 |
amwaterhouse | Change text of ok if viewport not null
|
commit | commitdiff | tree |
| next |
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