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Merge branch 'patch/JAL-2236_filtercolumns_seqassoc' into develop
2016-09-29 Jim ProcterMerge branch 'patch/JAL-2236_filtercolumns_seqassoc...
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2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation...
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2016-09-29 Jim ProcterMerge branch 'patch/JAL-2238_tcoffee_subgroups' into...
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2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup
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2016-09-24 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-09-24 Jim ProcterJAL-1919 whats new link
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2016-09-23 Jim ProcterJAL-1957 JAL-1479 tweak SIFTS mappings documentation...
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2016-09-23 Jim ProcterJAL-1957 JAL-1479 mention SIFTS mappings in PDB Structure...
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2016-09-23 Jim ProcterJAL-1957 release notes
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2016-09-23 Jim ProcterJAL-1962 release notes
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2016-09-23 Jim ProcterJAL-2214 fix docs (consistent and correct base pair...
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2016-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-09-23 Jim ProcterJAL-2189 JAL-1479 JAL-1491 JAL-1827 release notes
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2016-09-22 Jim ProcterJAL-2275 release notes
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2016-09-22 Jim ProcterJAL-2151 release notes
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2016-09-22 Jim ProcterJAL-2168 -news release notes
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2016-09-22 Jim ProcterJAL-1557 release notes
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2016-09-22 Jim ProcterJAL-2189 bumped date to 27th September \o/
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2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy docs (new files...
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2016-09-22 Jim ProcterJAL-2189 JAL-2092 popup show/hide cols with feature...
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2016-09-22 Jim ProcterJAL-2189 JAL-2077 note about CTRL-Click to right click...
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2016-09-22 Jim ProcterJAL-2189 tidy up docs
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2016-09-22 Jim ProcterJAL-1812 JAL-1868 release notes
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2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy doc section and...
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2016-09-21 Jim ProcterJAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release...
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2016-09-21 Jim ProcterJAL-1841 JAL-2214 updated RNA Structure Consensus documentation
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2016-09-21 Jim ProcterJAL-2214 JAL-1841 compute canonical, canonicalAndWobble...
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2016-09-21 Jim ProcterJAL-1841 JAL-2215 add the ‘ignore gaps’ structure consensus...
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2016-09-21 Jim ProcterJAL-2214 test for strict Watson-Crick pairing
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2016-09-21 Jim ProcterJAL-2215 fix - trigger alignment update when ‘ignore...
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2016-09-21 Jim ProcterJAL-2189 reworked annotation docs
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2016-09-21 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-09-19 Jim ProcterJAL-1577 release notes
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2016-09-19 Jim ProcterJAL-2027 releasenotes
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2016-09-19 Jim ProcterJAL-1563 release notes
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2016-09-19 Jim ProcterJAL-2189 JAL-2002 revised the structure chooser documentation
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2016-09-19 Jim ProcterJAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054...
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2016-09-19 Jim ProcterJAL-2189 JAL-1369 JAL-192 expand referenceseq documentation
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2016-09-19 Jim ProcterJAL-2189 what’s new - ensembl, new structure stuff...
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2016-09-19 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals
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2016-09-19 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2016-09-18 Jim ProcterJAL-1795 JAL-2206 prevent NPE when no data returned...
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2016-09-16 Jim ProcterJAL-2189 clear out old what’s new and add ensembl and...
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2016-09-16 Jim ProcterJAL-2189 JAL-1705 JAL-1795 ensembl fetching docs
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2016-09-16 Jim ProcterJAL-2089 tidied docs for sequence fetcher

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2016-09-16 Jim ProcterJAL-2089 release notes
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2016-09-16 Jim ProcterJAL-2089 zero day for 2.10 - 20th Sep 2016
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2016-09-16 Jim ProcterMerge branch 'patch/JAL-2164_updatesRESNUMtests' into...
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2016-09-16 Jim ProcterJAL-2164 update asserts for padded residue numbers...
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2016-09-14 Jim ProcterJAL-2164 create RESNUM features with padding the same...
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2016-09-14 Jim ProcterJAL-2168 simpler help text re -nonews
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2016-09-13 Jim ProcterJAL-2119 keeping gmungoc happy by not running linkcheck...
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2016-09-12 Jim ProcterMerge branch 'patch/JAL-2068_JAL-2169_multiviewannotworker...
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2016-09-09 Jim ProcterJAL-2119 links must match case on Linux systems
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2016-09-08 Jim ProcterJAL-2119 pass/resolve real help dir in link checker
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2016-09-08 Jim ProcterMerge branch 'feature/JAL-2119_helplinkchecker' into...
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2016-09-08 Jim ProcterJAL-1551 formatting
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2016-09-08 Jim ProcterJAL-2119 build fails if invalid links are present
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2016-09-08 Jim ProcterJAL-2119 non-zero exit if any invalid links
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2016-09-08 Jim ProcterJAL-2119 count and report total invalid anchor links
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2016-09-08 Jim ProcterJAL-2089 JAL-2119 help link fixups
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2016-09-08 Jim ProcterJAL-2119 linkcheck target. runs before build indices
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2016-09-07 Jim ProcterMerge branch 'bug/JAL-1803_JAL-2157' into develop
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2016-09-07 Jim ProcterJAL-1670 groundhog day: fix FeaturesFileTest by redacting...
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2016-09-07 Jim ProcterMerge branch 'bug/JAL-1803_JAL-2157' into develop
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2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
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2016-09-07 Jim ProcterJAL-2192 TODO
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2016-09-07 Jim ProcterJAL-2191 comments re chimera view code redundancy and...
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2016-09-07 Jim ProcterJAL-282 TODO - Sequence name from PDB had redundant...
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2016-09-07 Jim ProcterJAL-1803 transfer mapped chain’s PDBEntry to the *dataset...
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2016-09-07 Jim ProcterJAL-1803 JAL-1919 set type when structure file is parsed
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2016-09-07 Jim ProcterJAL-1803 first pass at updatePDBEntry
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2016-09-07 Jim ProcterJAL-1803 switched so ‘expected’ is constant in assert
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2016-09-06 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-09-05 Jim ProcterJAL-1563 UniProt FTS doc revisions
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2016-09-05 Jim ProcterJAL-2089 reworked and formatted doc for
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2016-09-05 Jim ProcterJAL-2089 reworked and formatted doc for
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2016-09-05 Jim ProcterJAL-2089 update Uniprot to UniProt in help docs.
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2016-09-05 Jim ProcterJAL-2089 drop MCView documentation from contents.
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2016-09-05 Jim ProcterJAL-1919 revised mmCIF documentation
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2016-09-05 Jim ProcterJAL-2089 bump release date for 2.10
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2016-09-04 Jim ProcterJAL-1919 preserve filename on restore of project so...
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2016-09-04 Jim ProcterJAL-1803 JAL-2106 patch tests for tighter PDB Primary...
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2016-09-04 Jim ProcterJAL-2148 JAL-1803 JAL-1919 resolve type for mmCIF loaded...
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2016-09-04 Jim ProcterJAL-1803 recover type field faithfully for mmCIF/PDB...
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2016-09-04 Jim ProcterJAL-1803 restore property array for a sequence’s associated...
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2016-09-04 Jim ProcterJAL-1803 chainCode moved onto property hashtable as...
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2016-09-04 Jim ProcterJAL-1803 patch test: PDBEntry.getFile() will always...
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2016-09-01 Jim ProcterMerge branch 'bug/JAL-2034_fix' into develop
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2016-09-01 Jim ProcterJAL-2034 - remember to reset needsOverviewUpdate at...
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2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch...
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2016-09-01 Jim ProcterJAL-1803 JAL-2188 experimental:
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2016-08-31 Jim ProcterJAL-1926 JAL-2106 source DB refs come from SequenceI...
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2016-08-31 Jim ProcterJAL-1926 JAL-2106 resolve source DB refs using canonical...
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2016-08-31 Jim ProcterJAL-1926 JAL-2106 fix PDB primary DBRef semantics:...
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2016-08-31 Jim ProcterJAL-2157 JAL-2154 simplify CanshowProducts code to...
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2016-08-31 Jim ProcterJAL-2034 fix logic so recalcConservation(true) returns...
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2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method...
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2016-08-31 Jim ProcterJAL-2034 remove todo - answer is yes!
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