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2022-03-23	Mateusz Warowny	JAL-3878 Create beans for un/marshalling service parameters	commit \| commitdiff \| tree
2022-03-18	Mateusz Warowny	JAL-3878 Create abstract ws discoverer providing common...	commit \| commitdiff \| tree
2022-03-15	Mateusz Warowny	JAL-3878 Connect alignment services with gui	commit \| commitdiff \| tree
2022-03-14	Mateusz Warowny	JAL-3878 Move array index search to ArrayUtils	commit \| commitdiff \| tree
2022-03-11	Mateusz Warowny	JAL-3878 Create web service menu manager.	commit \| commitdiff \| tree
2022-03-11	Mateusz Warowny	JAL-3878 Add hasPresets and hasParameters utility methods...	commit \| commitdiff \| tree
2022-03-09	Mateusz Warowny	JAL-3878 Add WebServiceProviderI - a view of services.	commit \| commitdiff \| tree
2022-03-09	Mateusz Warowny	JAL-3878 Improve performance of gap sequence construction.	commit \| commitdiff \| tree
2022-03-08	Mateusz Warowny	JAL-3878 Add web service reference to actions.	commit \| commitdiff \| tree
2022-03-04	Mateusz Warowny	JAL-3878 Change visibility of WebService methods to...	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Create alignment service "backend" classes	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Remove unused JobStatus methods	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Create abstract base classes for non-interactive...	commit \| commitdiff \| tree
2022-03-02	Mateusz Warowny	JAL-3878 Fix typo in method name (getAlignemnt)	commit \| commitdiff \| tree
2022-03-02	Mateusz Warowny	JAL-3878 Add serviceExecutor to AlignmentViewport.	commit \| commitdiff \| tree
2022-02-28	Mateusz Warowny	JAL-3878 Separate server job handle from task's sub...	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Provide javadoc for WebServiceClientI interface	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Create skeleton for alignment service action	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Create abstract base class for actions.	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Fix typo in getTooltip method name	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Move WebServiceJob class to jalview.ws2.api...	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Move CredentialType class to jalview.ws2.api...	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Create TaskEventListener interface.	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Create action and task interfaces.	commit \| commitdiff \| tree
2022-02-17	Mateusz Warowny	JAL-3878 Add interactive flag to WebService class	commit \| commitdiff \| tree
2022-02-17	Mateusz Warowny	JAL-3878 Create web service class - container for service...	commit \| commitdiff \| tree
2022-02-17	Mateusz Warowny	JAL-3878 Add WebServiceJob class.	commit \| commitdiff \| tree
2022-02-16	Mateusz Warowny	JAL-3878 Add interfaces for classes dealing with server...	commit \| commitdiff \| tree
2022-02-15	Mateusz Warowny	JAL-3878 Add universal id generator to MathUtils.	commit \| commitdiff \| tree
2021-12-23	Mateusz Warowny	Merge branch 'JAL-3927_ws_preferences_dialog_fix' into...	commit \| commitdiff \| tree
2021-12-23	Mateusz Warowny	Merge branch 'update/JAL-3066_updated_testng' into...	commit \| commitdiff \| tree
2021-11-25	Mateusz Warowny	JAL-3927 Make url checks asynchronous in preferences...	commit \| commitdiff \| tree
2021-11-23	Mateusz Warowny	JAL-3066 Fix ambiguous assertEquals casting values...	commit \| commitdiff \| tree
2021-11-18	Mateusz Warowny	JAL-3066 Remove redundant throws declaration from SlivkaPara...	commit \| commitdiff \| tree
2021-11-16	Mateusz Warowny	Merge branch 'JAL-3866_RNAalifold-slivka-client' into...	commit \| commitdiff \| tree
2021-11-16	Mateusz Warowny	Merge branch 'alpha/JAL-3899_deuniquify_refactor' into...	commit \| commitdiff \| tree
2021-10-07	Mateusz Warowny	JAL-3899 Replace prints with logger messages.	commit \| commitdiff \| tree
2021-10-06	Mateusz Warowny	JAL-3899 Update usages of uniquify and deuniquify.	commit \| commitdiff \| tree
2021-10-06	Mateusz Warowny	JAL-3899 Refactor sequence de/uniquification.	commit \| commitdiff \| tree
2021-09-02	Mateusz Warowny	Add RNAalifold service instance to slivka web services.	commit \| commitdiff \| tree
2021-07-29	Mateusz Warowny	Merge branch 'improvement/JAL-3848_slivka_0.8' into...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	Merge branch 'bug/JAL-3807_jpred-with-slivka' into...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	Merge commit '0b438477b16470202bddfecb54e0587036b37202...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	JAL-3066 Fix NullPointerException thrown when showing...	commit \| commitdiff \| tree
2021-07-23	Mateusz Warowny	JAL-3848 Update slivka client javajs library.	commit \| commitdiff \| tree
2021-07-21	Mateusz Warowny	JAL-3848 print exception for failed align jobs	commit \| commitdiff \| tree
2021-07-21	Mateusz Warowny	JAL-3848 add latest slivka-client fixes.	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	Merge branch 'jpred-fix' into bug/JAL-3807_jpred-with...	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	JAL-3807 Fix SlivkaWSInstance not fetching alignments.	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	Merge branch 'bug/JAL-3849_aacon-parameters' into improvemen...	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	JAL-3690 Remove references to old AlignCalcManager.	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3848 SlivkaParamSet: reformat code and add service...	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3848 Update slivka client library.	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3849 Remove join() which blocked the ui.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Add single sequence capabilities to jws2...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Move new JPred client to the jws2 package.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Re-implement results processing.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'bug/JAL-3809_ws_params_dialog_fix' into...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'bug/JAL-3810_annotation_ws_stopping_abruptly...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3809 - Fixed param edit dialog for jalviewjs.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'feature/JAL-3690_callback-based-web-services...	commit \| commitdiff \| tree
2021-02-05	Mateusz Warowny	JAL-3810 - Add trace method to javascript implementation...	commit \| commitdiff \| tree
2021-02-05	Mateusz Warowny	JAL-3810 - Replace log.trace() calls with log.debug()	commit \| commitdiff \| tree
2020-10-21	Mateusz Warowny	JAL - 3690 AlignCalc rebuilt - FutureTask-based manager	commit \| commitdiff \| tree
2020-07-22	Mateusz Warowny	JAL-3690 changed AWSThread to use Timer instead	commit \| commitdiff \| tree
2020-07-20	Mateusz Warowny	JAL-3690 alternative servers menu fix	commit \| commitdiff \| tree
2020-07-17	Mateusz Warowny	JAL-3690 restore jws1 JPred	commit \| commitdiff \| tree
2020-07-16	Mateusz Warowny	JAL-3690 switching to CompletableFuture to allow chaining	commit \| commitdiff \| tree
2020-07-15	Mateusz Warowny	JAL-3690 mark JalviewChangeSupport as deprecated	commit \| commitdiff \| tree
2020-07-15	Mateusz Warowny	JAL-3690 refactoring web-services discovery	commit \| commitdiff \| tree
2020-07-09	Mateusz Warowny	Merge branch 'feature/JAL-3686_slivka_client_js_update...	commit \| commitdiff \| tree
2020-07-09	Mateusz Warowny	Merge branch 'feature/JAL-3686_slivka_client_js_update...	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	JAL-3683 retrieve job status to output stream	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	JAL-6386 update slivka client for j2s compatibility	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	Merge branch 'feature/JAL-3515-slivka-preferences'...	commit \| commitdiff \| tree
2019-10-17	Mateusz Warowny	JAL-3066 Slivka client update for changed api endpoints.	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	JAL-3066 Create labels for fields and hack it to work...	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	JAL-3066 change service type naming to avoid menu entry...	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	JAL-3066 Read parameters directly from args list allowing...	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	Update slivka-client library: multiple form field values.	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	JAL-3066 Fix log files retrieval.	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	Jal-3066 Retrieve job log and error log from the server.	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	JAL-3066 AACon: pass the instance name of the service...	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	JAL-3066 Check if annotation and features are present...	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-04	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-01	Mateusz Warowny	JAL-3066 Sequence annotation services.	commit \| commitdiff \| tree
2019-09-27	Mateusz Warowny	JAL-3066 Automatically discoverable Protein sequence...	commit \| commitdiff \| tree
2019-09-27	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	JAL-3066 Annotation Service Instance stub	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	SlivkaWSDiscoverer formatting fix	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	JAL-3066 Move common web service methods to abstract...	commit \| commitdiff \| tree
2019-09-19	Mateusz Warowny	JAL-3066 Auto discover multiple sequence alignment...	commit \| commitdiff \| tree
2019-09-16	Mateusz Warowny	Set the initial value of the choice field to the default...	commit \| commitdiff \| tree
2019-09-16	Mateusz Warowny	Add the remaining msa services to the Discoverer	commit \| commitdiff \| tree
2019-09-11	Mateusz Warowny	Change choice field to use dropbox instead of radio...	commit \| commitdiff \| tree
2019-09-11	Mateusz Warowny	Create generic msa service instance	commit \| commitdiff \| tree
2019-09-06	Mateusz Warowny	Merge remote-tracking branch 'origin/alpha/JAL-3066_Jalview_...	commit \| commitdiff \| tree
2019-09-06	Mateusz Warowny	JAL-3066 Working custom parameters for clustalo	commit \| commitdiff \| tree
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