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2012-10-31	jprocter	Merge branch 'Release_2_8_Branch' of https://source...	commit \| commitdiff \| tree
2012-10-31	jprocter	JAL-1130 fix gif palette (arggh!)	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 nice installer splashscreens and...	commit \| commitdiff \| tree
2012-10-30	jprocter	Merge branch 'Release_2_8_Branch' of https://source...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 fireworks editable huge jalview logo in RGB	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 update install anywhere installer...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 update install anywhere installer...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 updated installAnywhere program logos	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 preserved old installAnywhere installer logo...	commit \| commitdiff \| tree
2012-10-29	jprocter	JAL-1130 made background transparent for small logo...	commit \| commitdiff \| tree
2012-10-24	jprocter	JAL-1193 call setLoadingFromArchiveFinished(true) for...	commit \| commitdiff \| tree
2012-10-24	jprocter	JAL-1193 patch prevents JalviewJmolBinding from handling...	commit \| commitdiff \| tree
2012-10-22	jprocter	Jalview 2.8 Source Header	commit \| commitdiff \| tree
2012-10-04	jprocter	Merge branch 'develop' into Release_2_8_Branch	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-636 switch to simple REST interface to dbfetch...	commit \| commitdiff \| tree
2012-10-04	jprocter	avoid importing the mapping every time we parse a uniprot...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-636 tweak main() based test to allow DAS sources...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-1188 - set the user agent to Jalview Desktop/$...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-1064 JAL-671 make sure all buttons are disabled...	commit \| commitdiff \| tree
2012-10-03	jprocter	formatting	commit \| commitdiff \| tree
2012-10-03	jprocter	update release branch to v2.8	commit \| commitdiff \| tree
2012-10-03	jprocter	formatting	commit \| commitdiff \| tree
2012-10-03	jprocter	JAL-1026 - insert a sensible default for proxy so Jalview...	commit \| commitdiff \| tree
2012-10-03	jprocter	JAL-1183 JAL-343 - use dialog queue for JABA warning...	commit \| commitdiff \| tree
2012-10-02	jprocter	JAL-1185 patch NPE - create new group for subtree on...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1130 JAL-1137 messy hardcoding of author list to...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1130 JAL-1139 hardcode preferred height to logo...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1130 more robust loading code and different logos...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1183 dialog thread is only started after the splashscree...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1111 dialog flickers whilst example file starts...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1184 apparent deadlock when launching jalview on...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1183 showNews adds news discovery and display thread...	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1183 use dialog queue for usage statistics prompt	commit \| commitdiff \| tree
2012-10-01	jprocter	JAL-1183 dialog queue	commit \| commitdiff \| tree
2012-09-27	jprocter	JAL-1030 patch typo	commit \| commitdiff \| tree
2012-09-27	jprocter	JAL-1179 - regression from JAL-1030 patch implicitly...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1031 allow empty selections to pass through to...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1179 note and patch for exceptions raised when...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1031 JAL-1032 if selection is non-null but empty...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1010 write validated value back to text field to...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-970 JAL-1052 (comment about JAL-1140)	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-970 document interactive RNA secondary structure...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1173 - trap redraw buffer OOM errors. needs a test...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1173 try to catch OOMs when loading annotation...	commit \| commitdiff \| tree
2012-09-25	jprocter	JAL-1076 add note in documentation about Alt rather...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-1130 transparent big version for JNLP and file...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-958 revised applet parameter documentation to standardis...	commit \| commitdiff \| tree
2012-09-24	jprocter	formatting	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-958 normalise logo menu options in applet	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-958 enable logo display when normalise option selected	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-516 JAL-759 JAL-1066 group & group colourscheme...	commit \| commitdiff \| tree
2012-09-24	jprocter	only recalc group conservation after last sequence...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-516 JAL-759 JAL-1066 group & group colourscheme...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-958 JAL-966 refactor group/alignment associated...	commit \| commitdiff \| tree
2012-09-24	jprocter	JAL-1130 remove lossy logo versions	commit \| commitdiff \| tree
2012-09-21	jprocter	Merge branch 'JAL-1130' into develop	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-849 try harder and wait for longer for JABAWS to...	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1171 refactor code to allow gui update for global...	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1165 visual delay whilst results are processed.	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1165 allow progress indicators on the web service...	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1130 jalview spinning icon for web service dialog	commit \| commitdiff \| tree
2012-09-21	jprocter	JAL-1130 splashscreen logo	commit \| commitdiff \| tree
2012-09-19	jprocter	JAL-1130 new logo in help, splash screen and web services...	commit \| commitdiff \| tree
2012-09-19	jprocter	JAL-1130 new logo spinner in webservices status window	commit \| commitdiff \| tree
2012-09-19	jprocter	JAL-1130 large logo	commit \| commitdiff \| tree
2012-09-19	jprocter	JAL-1130 small rotating logo	commit \| commitdiff \| tree
2012-09-19	jprocter	JAL-1130 made SplashScreen able to be a dialog that...	commit \| commitdiff \| tree
2012-09-19	jprocter	JAL-1130 refactored standard hyperlink handler code...	commit \| commitdiff \| tree
2012-09-19	jprocter	JAL-1130 trial view of new logo on splashscreen.	commit \| commitdiff \| tree
2012-09-19	jprocter	JAL-1170 column and row positions confused in implementation...	commit \| commitdiff \| tree
2012-09-07	jprocter	todos	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-1065 documentation and image	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-958	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-842 documentation	commit \| commitdiff \| tree
2012-09-06	jprocter	2.7.1 squashed	commit \| commitdiff \| tree
2012-09-06	jprocter	typo	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-1065 whats new entry for tcoffee scores	commit \| commitdiff \| tree
2012-09-06	jprocter	fix image link	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-958 documented logo menu items	commit \| commitdiff \| tree
2012-09-06	jprocter	merge new 2.7.1 and 2.8 features into one	commit \| commitdiff \| tree
2012-09-06	jprocter	typo	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-958 flag indicating if visualization settings for...	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-958 store/recover normalised flag	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-958 store normalised flag in jalview project	commit \| commitdiff \| tree
2012-09-06	jprocter	PCA what's new and score matrix documentation page	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-1013 JAL-1167 JAL-1121 JAL-1125	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-1027 JAL-1167 documentation and patched DNA/RNA...	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-1013 - employ index parameter rather than hardcode...	commit \| commitdiff \| tree
2012-09-06	jprocter	JAL-1167 method and simple tests for printing score...	commit \| commitdiff \| tree
2012-09-05	jprocter	JAL-979 tidy up shmmr hardcoded WS definition	commit \| commitdiff \| tree
2012-09-05	jprocter	JAL-1136 give pre-existing custom settings a special...	commit \| commitdiff \| tree
2012-09-05	jprocter	formatting	commit \| commitdiff \| tree
2012-09-05	jprocter	patch for NPE when no services are available to resolve...	commit \| commitdiff \| tree
2012-09-05	jprocter	JAL-975 null any existing preset if user has supplied...	commit \| commitdiff \| tree
2012-09-05	jprocter	JAL-1162 catch security exception and just use bare...	commit \| commitdiff \| tree
2012-09-05	jprocter	JAL-994 fix when sequence is too short and no jobs run	commit \| commitdiff \| tree
2012-09-05	jprocter	JAL-1111 allow news reader window to be moved even...	commit \| commitdiff \| tree
2012-09-05	jprocter	JAL-976 fix AACon name typo in source and GUI	commit \| commitdiff \| tree
2012-09-04	jprocter	typo	commit \| commitdiff \| tree
2012-09-04	jprocter	JAL-976 documentation for disorder, AACon, ClustalO...	commit \| commitdiff \| tree
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