git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Merge branch 'patchJAL-674_offset' into develop
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop
 commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 add sequence associated annotation rows to...
commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset...
commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code
 commit | commitdiff | tree
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop
 commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotation...
commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 formatting
 commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 unused variable
 commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 bug in test
 commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 test that PDB annotation created when importing...
commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 patch NPE bug when test run in isolation
 commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 fix test properties path and add properties...
commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-674 JAL-966 new method to retrieve all views
 commit | commitdiff | tree
2014-11-27 Jim Procterorganise imports
 commit | commitdiff | tree
2014-11-27 Jim ProcterJAL-966 promote getName to an api method
 commit | commitdiff | tree
2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into develop
 commit | commitdiff | tree
2014-11-26 Jim ProcterMerge branch 'JAL-674_fixannotlabels' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-11-26 Jim ProcterJAL-674 make RNAML-extracted secondary structure lines...
commit | commitdiff | tree
2014-11-26 Jim ProcterJAL-1578 fix logic for showing score when no description...
commit | commitdiff | tree
2014-11-26 Jim ProcterJAL-674 JAL-1578 commented code for displaying annotation...
commit | commitdiff | tree
2014-11-26 Jim ProcterJAL-674 friendly name for PDB file included in secondary...
commit | commitdiff | tree
2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string...
commit | commitdiff | tree
2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line
 commit | commitdiff | tree
2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include...
commit | commitdiff | tree
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into develop
 commit | commitdiff | tree
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-11-25 Jim Procterfix for JAL-689 ensure fastpainting flag set only when...
commit | commitdiff | tree
2014-11-25 Jim Procterformatting
 commit | commitdiff | tree
2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by...
commit | commitdiff | tree
2014-11-25 Jim ProcterMerge branch 'patch_JAL-689' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-11-25 Jim Procterback out duplicate jfree classpath entry
 commit | commitdiff | tree
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
 commit | commitdiff | tree
2014-11-24 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_2_8_2...
commit | commitdiff | tree
2014-11-24 Jim ProcterJAL-1593 refactor rna helix colours to static singleton...
commit | commitdiff | tree
2014-11-24 Jim ProcterJAL-1264 update annotation panel dimensions before...
commit | commitdiff | tree
2014-11-24 Jim ProcterJAL-1595 update annotation sort on opening of the ...
commit | commitdiff | tree
2014-11-24 Jim ProcterJAL-1595 annotation score is total number of rna helices
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 interactive editing of secondary structure...
commit | commitdiff | tree
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into develop
 commit | commitdiff | tree
2014-11-23 Jim ProcterMerge branch 'JAL-1569_wuss_vienna_broke' into Release_2_8_2...
commit | commitdiff | tree
2014-11-23 Jim Procteremploy test and secondary structure character for determinin...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 formatting
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1593 allow per-sequence shading of RNA helix (stored...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 test for open/close RNA parenthesis character
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 formatting
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 refactoring of stockholm test
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 consistent handling of sequence and alignment...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 revise tests to count number and type of annotation...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 formatting
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 preserve input ordering for stockholm files...
commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1569 remove stdout on parsing RNA
 commit | commitdiff | tree
2014-11-23 Jim ProcterJAL-1152 avoid NPE on null alignment annotation vector
 commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-674 add RNA sequence associated annotation to alignment...
commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-1569 formatting
 commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-1140 sensible name for seuqences in RNAML files...
commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-1489 change initial value to distinguish non-rna...
commit | commitdiff | tree
2014-11-21 Jim ProcterJAL-1592 JAL-1489 avoid invalid RNA structure and distinguis...
commit | commitdiff | tree
2014-11-20 Jim ProcterJAL-1569 rna pair code in secondary structure character...
commit | commitdiff | tree
2014-11-20 Jim ProcterJAL-674 JAL-1569 mark RNA helix number in the value...
commit | commitdiff | tree
2014-11-20 Jim ProcterJAL-1569 remove log output during RNA secondary structure...
commit | commitdiff | tree
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into develop
 commit | commitdiff | tree
2014-11-18 Jim ProcterMerge branch 'JAL-1587_promotedisorder' into Release_2_8_2_B...
commit | commitdiff | tree
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary structure...
commit | commitdiff | tree
2014-11-18 Jim ProcterJAL-674 JAL-1512 JAL-1333 documentation
 commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1517 JAL-1587 JAL-674 secondary structure and annotation...
commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1517 release notes for 2.8.2
 commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1587 distinct calc IDs for JPredMSA and Jpred single...
commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1587 propagate results of JABA sequence based predictors...
commit | commitdiff | tree
2014-11-17 Jim Procterimports and formatting
 commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1587 propagate JPred annotation from legacy jpred...
commit | commitdiff | tree
2014-11-17 Jim Procterformatting
 commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1587 JAL-407 instrument setDataset to add dataset...
commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'r282_portforward' into develop
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' of https://source...
commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'r282_portforward' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1469 help documentation
 commit | commitdiff | tree
2014-11-17 Jim ProcterJAL-1469 help documentation
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'Release_2_8_2_Branch' into mrg_dev_282
 commit | commitdiff | tree
2014-11-17 Charles Ofoegbucomand line support for svg generation
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge branch 'mrg_dev_282' into Release_2_8_2_Branch
 commit | commitdiff | tree
2014-11-17 gmungocJAL-1528 Chimera Help doc + fixes to setting colours
 commit | commitdiff | tree
2014-11-17 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ...
commit | commitdiff | tree
2014-11-17 gmungocJAL-1528 Chimera tidy errors, focus after align, close...
commit | commitdiff | tree
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
 commit | commitdiff | tree
2014-11-17 Jim ProcterMerge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc...
commit | commitdiff | tree
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
commit | commitdiff | tree
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
commit | commitdiff | tree
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies
 commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-1541 exclude all unnecessary jalview.io classes...
commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'develop' into features/JAL-1541_BioJsMSAViewer...
commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build
 commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
commit | commitdiff | tree
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
commit | commitdiff | tree
2014-11-12 Jim Procterjavadoc
 commit | commitdiff | tree
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotation...
commit | commitdiff | tree
next