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JAL-1882 variable renamed to avoid confusion with member variable
2015-09-16 gmungocJAL-1882 variable renamed to avoid confusion with member...
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2015-09-16 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus...
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2015-09-16 gmungocJAL-1684 typo correction
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2015-09-16 gmungocJAL-1859 removed temporary test copy of pdb file
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2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils...
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2015-09-16 gmungocJAL-1859 code tidy, remove 'absolute URL' option
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2015-09-16 gmungocJAL-1859 working variable to aid inspection in debugger
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2015-09-16 gmungocJAL-1859 try 1gaq.txt in /lang so it is in the built jar
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2015-09-16 gmungocJAL-1859 debug logging removed
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2015-09-16 gmungocJAL-1859 revert to resolving full path to PDB file
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2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as...
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2015-09-16 gmungocJAL-1859 temporary debug output
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2015-09-15 gmungocJAL-1859 use unresolved PDB filename
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2015-09-15 gmungocJAL-1859 strip file name from applet documentbase
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2015-09-15 gmungocJAL-1859 refactoring / debugging added
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2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
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2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match...
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2015-09-14 gmungocJAL-1880 updated mapping tests to ensure they handle...
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2015-09-14 gmungocJAL-1270 test added for separatorListToArray
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2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
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2015-09-14 gmungocJAL-1684 align added alignment to match original in...
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2015-09-14 gmungocJAL-1684 align added alignment to match original in...
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2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame
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2015-09-09 gmungocJAL-857 debug=true for Jmol example diagnosis
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2015-09-09 gmungocJAL-857 added debug output to track down document base...
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2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu...
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2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped...
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2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-08 gmungocJAL-1859 debug output of pdb mappings (mine and SSMs)
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2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar!
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2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-08 gmungocJAL-1859 Jmol applet black background; fix _jvmols...
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2015-09-07 gmungocJAL-1859 Jmol linked applet updated to use Jmol2.js
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2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as...
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2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef...
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2015-09-04 gmungocJAL-1859 jmolFindTarget not JmolFindTarget
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2015-09-04 gmungocJAL-1859 embedded Jmol applet example updated for Jmol...
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2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not...
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2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute...
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2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsing...
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2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-02 gmungocJAL-1544 spelling
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2015-09-02 gmungocJAL-1355 User error text externalised to message bundle
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2015-09-02 gmungocJAL-1768 set initial 'enabled' state for id width label...
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2015-09-02 gmungocJAL-1264 test made i18n robust
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2015-09-02 gmungocJAL-1768 enable fixed width output when auto-width...
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2015-09-02 gmungocJAL-1843 fixed input/add from textbox; added @Override...
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2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-02 gmungocJAL-1619 additions, standardised menu item symbols
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2015-09-02 gmungocJAL-1681 mention of cDNA consensus added
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2015-09-02 gmungocJAL-1673 new test to verify transferRESNUMFeatures()
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2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-01 gmungocJAL-1693 split frame opened for get xrefs, translate...
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2015-09-01 gmungocJAL-1672 additional assertions added
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2015-09-01 gmungocJAL-1355 user error message text externalised
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2015-08-28 gmungocJAL-1836 temporary workaround for negative resNumIns...
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2015-08-27 gmungocJAL-1270 comments added regarding required remote service
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2015-08-27 gmungocJAL-1759 updated unit test for removal of trim on Atom...
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2015-08-27 gmungocJAL-1830 tests relocated to AlignViewportTest after...
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2015-08-27 gmungocJAL-1627 updated expected tooltip text in unit test
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2015-08-27 gmungocJAL-1830 unit tests for removing (or not) mappings...
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2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from...
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2015-08-27 gmungocJAL-845 compacting duplicated code
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2015-08-27 gmungocJAL-1611 debug sysout suppressed
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2015-08-27 gmungocJAL-1544 message label corrected
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2015-08-27 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-08-27 gmungocJAL-1701 help page for Split Frame view linked in
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2015-08-27 gmungocJAL-1544 'Jalview' consistently capitalised
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2015-08-27 gmungocJAL-892 JAL-1764 Varna and Chimera also saved to project...
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2015-08-27 gmungocJAL-892 saved to project; external help link updated
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2015-08-27 gmungocJAL-1727 added EBI mirror of DAS registry
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2015-08-27 gmungocJAL-1596 JAL-1725 JAL-1588 updates for selection in...
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2015-08-27 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-08-27 gmungocJAL-1725 restrict Jalview's Jetty server to localhost
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2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead...
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2015-08-26 gmungocJAL-1596 check for null pointer (thread running after...
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2015-08-26 gmungocJAL-1270 test separated out of JalviewChimeraView
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2015-08-26 gmungocJAL-1270 corrected path to test properties file
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2015-08-26 gmungocJAL-1270 separated Jmol and Chimera tests to avoid...
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2015-08-26 gmungocJAL-1759 updated unit test for removal of trim of Atom...
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2015-08-26 gmungocJAL-1840 correct setting status bar for structure mouseover
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2015-08-26 gmungocJAL-1759 added check for null (console 'history')
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2015-08-26 gmungocFix to use correct resource bundle entry
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2015-08-26 gmungocJAL-1759 corrected syntax for 'atom picked' callback...
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2015-08-25 gmungocJAL-1780 just a spelling change
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2015-08-25 gmungocJAL-1674 more correct status bars in splitframe mouseover...
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2015-08-24 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-08-24 gmungocJAL-1759 removed trim() of Atom.resNumIns as not backwards...
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2015-08-24 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-08-24 gmungocJAL-845 error message on syserr if supplied files don...
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2015-08-24 gmungocremove mentions of non-functional RNAInteraction colourscheme
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2015-08-20 gmungocJAL-1833 added unit tests (some failing) for wrapToolitp
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2015-08-19 gmungocJAL-1782 don't save TESTNG output summary to git
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2015-08-19 gmungocJAL-1725 log to sysout when listener shuts down
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2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull...
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2015-08-17 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-08-17 gmungocJAL-1800 separated SearchResults.getCharacters() from...
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