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2011-10-10	jprocter	update author list in license for (JAL-826)	commit \| commitdiff \| tree
2011-10-07	jprocter	merge Jan and Lauren's RNA GUI changes into develop...	commit \| commitdiff \| tree
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_merge...	commit \| commitdiff \| tree
2011-10-03	jprocter	Merge branch 'Release_2_7_Branch'	commit \| commitdiff \| tree
2011-10-03	jprocter	redact previous commit - fileassociation tag not allowed...	commit \| commitdiff \| tree
2011-10-03	jprocter	removed unnecessary parameters and changed alignment...	commit \| commitdiff \| tree
2011-10-03	jprocter	compile swingreader component for java 1.5 (JAL-948)	commit \| commitdiff \| tree
2011-09-28	jprocter	Merge branch 'Release_2_7_Branch'	commit \| commitdiff \| tree
2011-09-28	jprocter	jnlps with and without file associations for default...	commit \| commitdiff \| tree
2011-09-28	jprocter	broken link. rearranged opening pg	commit \| commitdiff \| tree
2011-09-27	jprocter	typo	commit \| commitdiff \| tree
2011-09-27	jprocter	switch to git release building	commit \| commitdiff \| tree
2011-09-27	jprocter	patch name, reference and URL for Multi-Harmony : JAL-724	commit \| commitdiff \| tree
2011-09-27	jprocter	ensure server errors return a URL and response document...	commit \| commitdiff \| tree
2011-09-27	jprocter	use jalview properties preference to enable RSBS editor...	commit \| commitdiff \| tree
2011-09-27	jprocter	same overzeaolous logic (JAL-915)	commit \| commitdiff \| tree
2011-09-27	jprocter	start of Release 2.7	commit \| commitdiff \| tree
2011-09-27	jprocter	JAL-944 - replaced stale PFAM links for 2.7 release...	commit \| commitdiff \| tree
2011-09-27	jprocter	backout overzealous logic disabling feature links in...	commit \| commitdiff \| tree
2011-09-27	jprocter	NPE fix	commit \| commitdiff \| tree
2011-09-27	jprocter	apply version 2.7 copyright	commit \| commitdiff \| tree
2011-09-26	jprocter	exclude build artefacts from repository	commit \| commitdiff \| tree
2011-09-26	jprocter	updated documentation table of contents, menus and...	commit \| commitdiff \| tree
2011-09-26	jprocter	documentation for news reader (JAL-943)	commit \| commitdiff \| tree
2011-09-26	jprocter	tweak installer with IA2010 - fixes installerObjects...	commit \| commitdiff \| tree
2011-09-26	jprocter	fix jar dependency in InstallAnywhere	commit \| commitdiff \| tree
2011-09-26	jprocter	tidying classpath and fixing InstallAnywhere build	commit \| commitdiff \| tree
2011-09-26	jprocter	tweaked dialog layout. should consider refactoring	commit \| commitdiff \| tree
2011-09-26	jprocter	add new dependencies for 2.7 release	commit \| commitdiff \| tree
2011-09-26	jprocter	make news window a modal dialog on the jalview desktop...	commit \| commitdiff \| tree
2011-09-26	jprocter	avoid deprecation and ensure dialog close event is...	commit \| commitdiff \| tree
2011-09-25	jprocter	organise imports	commit \| commitdiff \| tree
2011-09-25	jprocter	more focus fixing (JAL-943)	commit \| commitdiff \| tree
2011-09-25	jprocter	fix logic to ensure first check for news is correct...	commit \| commitdiff \| tree
2011-09-23	jprocter	try even harder to get focus - for benefit of windows...	commit \| commitdiff \| tree
2011-09-23	jprocter	ensure blog window gets put to front after dialogs...	commit \| commitdiff \| tree
2011-09-23	jprocter	debugged example file again - old version had view...	commit \| commitdiff \| tree
2011-09-22	jprocter	refactor and remove excess imports (JAL-943)	commit \| commitdiff \| tree
2011-09-22	jprocter	jalview rss reader based on jswingreader (JAL-943)	commit \| commitdiff \| tree
2011-09-20	jprocter	help documentation for Jalview 2.7	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-747 - made warning message friendlier and more...	commit \| commitdiff \| tree
2011-09-16	jprocter	fix for JAL-895 - new exampleFile_2_7.jar and logic...	commit \| commitdiff \| tree
2011-09-16	jprocter	numerically ataxic comments.	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-574 added option to enable/disable 'follow selection...	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-940 - removed legacy service options from preferences...	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-468 typo and label length in dialog	commit \| commitdiff \| tree
2011-09-16	jprocter	patch for JAL-935 - warning messages raised when alignment...	commit \| commitdiff \| tree
2011-09-16	jprocter	JAL-468 JAL-936 sort alignment by tree and autosort...	commit \| commitdiff \| tree
2011-09-16	jprocter	tweak english	commit \| commitdiff \| tree
2011-09-15	jprocter	documentation for new preferences (JAL-234 and web...	commit \| commitdiff \| tree
2011-09-15	jprocter	documentation for JAL-234	commit \| commitdiff \| tree
2011-09-15	jprocter	JAL-860 fixed grammar for one structure vs many structures...	commit \| commitdiff \| tree
2011-09-15	jprocter	JAL-854 tweaked menu layout so services appear before...	commit \| commitdiff \| tree
2011-09-14	jprocter	typo	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-234 - default button to reset min/max colours and...	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-934 - refactor to use label font functions	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-934 - refactor to use label font functions	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-934 - standard label font functions	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-931 (related) - utility to split an alignment database...	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-931 - groovy test harness code.	commit \| commitdiff \| tree
2011-09-14	jprocter	test data for JAL-701	commit \| commitdiff \| tree
2011-09-14	jprocter	patch for NPE (not clear if NPE is evidence of deeper...	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-766 JAL-733 - new alignment->jmol associations...	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-766 JAL-733 - new alignment->jmol associations...	commit \| commitdiff \| tree
2011-09-14	jprocter	fix for JAL-930	commit \| commitdiff \| tree
2011-09-14	jprocter	JAL-766 JAL-733 - new alignment->jmol associations...	commit \| commitdiff \| tree
2011-09-12	jprocter	JAL-927 ensure api method calls that affect GUI state...	commit \| commitdiff \| tree
2011-09-05	jprocter	note about ensuring callers of loadAlignment(..) save...	commit \| commitdiff \| tree
2011-09-05	jprocter	removed old VARNA library	commit \| commitdiff \| tree
2011-08-30	jprocter	patch for JAL-731	commit \| commitdiff \| tree
2011-08-30	jprocter	patch for JAL-729 - NPE avoided and cut and paste import...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-915 - ensured that exceptions are not raised in...	commit \| commitdiff \| tree
2011-08-30	jprocter	fix for JAL-917 - ensure all sequence strings are made...	commit \| commitdiff \| tree
2011-08-30	jprocter	fix for JAL-917 - ensure all sequence strings are made...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 - conditional to hide the RSBS service editing...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 rsbs service editing	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 JalviewDialog for RSBS service editing pane	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 store/reset .jalview_properties setting for...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 serialise and deserialise multiple rest client...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 - notify user of parsing problems for results...	commit \| commitdiff \| tree
2011-08-30	jprocter	retrieve URL for datasource of packed set	commit \| commitdiff \| tree
2011-08-30	jprocter	ensure parsing errors and 'lack of data' errors are...	commit \| commitdiff \| tree
2011-08-30	jprocter	JAL-715 need to URLencode constant values when serializing...	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-715 - grammar for warning message.	commit \| commitdiff \| tree
2011-08-29	jprocter	added notes on third party library licencing and updated...	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-919, JAL-715 - prototype service editing dialog...	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-633, JAL-591 - refactored ArgumentI.getValue from...	commit \| commitdiff \| tree
2011-08-29	jprocter	refactored popup dialog boilerplate code to own class	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-633 simple concrete parameter and option objects...	commit \| commitdiff \| tree
2011-08-29	jprocter	JAL-633, JAL-591 - refactored ArgumentI.getValue from...	commit \| commitdiff \| tree
2011-08-25	jprocter	constructor only needs GUI container interface	commit \| commitdiff \| tree
2011-08-25	jprocter	JAL-591 - refactored web service parameter dialog to...	commit \| commitdiff \| tree
2011-08-25	jprocter	JAL-715 - better validation logic	commit \| commitdiff \| tree
2011-08-25	jprocter	debug dialog	commit \| commitdiff \| tree
2011-08-25	jprocter	JAL-715 - prevent empty elements being generated	commit \| commitdiff \| tree
2011-08-24	jprocter	JAL-715 dialog for interactively editing a new or existing...	commit \| commitdiff \| tree
2011-08-24	jprocter	new Swing and SWT capable form layout manager - miglayout	commit \| commitdiff \| tree
2011-08-24	jprocter	JAL-715 bugfixes and refactor of parsing code for use...	commit \| commitdiff \| tree
2011-08-24	jprocter	refactor labelled button creator to JvSwingUtils	commit \| commitdiff \| tree
2011-08-23	jprocter	JAL-715 - simple tests and functions for IO of service...	commit \| commitdiff \| tree
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