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JAL-2962 option to offer BLOSUM62 for nucleotide PCA
2018-04-26 gmungocJAL-2962 option to offer BLOSUM62 for nucleotide PCA
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2018-04-26 gmungocJAL-2962 code tidying/documentation (non-functional...
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2018-04-25 gmungocJAL-1767 minor field tidying prior to functional changes
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2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
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2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
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2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
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2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
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2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
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2018-03-21 gmungocJAL-2754 renamed proguard.jar to include version number
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2018-03-21 gmungocJAL-2754 5.3.3 update of proguard.jar
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2018-03-21 gmungocJAL-2754 update to specify Java 1.8(+)
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2018-03-21 gmungocJAL-2754 update to Java 1.8
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2018-03-16 gmungocJAL-2679 getGeneId() now uses the same pattern as getGeneLoc...
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2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
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2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop
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2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
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2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
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2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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2018-03-08 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-08 gmungocJAL-2885 tests updated for code changes
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2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
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2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table
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2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07 gmungocJAL-2922 i18n and bespoke handler for Invert Selection
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2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases...
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2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence...
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2018-03-07 gmungocJAL-2925 handle empty annotation when copying group...
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2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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2018-02-28 gmungocJAL-2924 no tooltip over null annotation positions
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2018-02-20 gmungocJAL-2897 updated unit test for code change
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2018-02-20 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2018-02-09 gmungocJAL-2789 avoid using transcript (with no UTR) as CDS...
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2018-02-09 gmungocJAL-2789 code format changes only (before functional...
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2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1
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2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug
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2018-02-07 gmungocJAL-2808 ensure pattern field re-enabled when needed...
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2018-02-05 gmungocJAL-2897 more informative description on synonymous...
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2018-02-05 gmungocJAL-2897 more informative description on synonymous...
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2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge
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2018-02-05 gmungocJAL-2897 more informative description on synonymous...
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2018-02-02 gmungocJAL-984 merged to spikes-mungo
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2018-02-02 gmungocMerge branch 'feature/JAL-984splitAdjuster' into features...
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2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotation...
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2018-02-02 gmungocJAL-984 better behaved panel height adjuster
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2018-01-31 gmungocJAL-2792 added tooltip to menu items in case of truncation
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2018-01-30 gmungocJAL-2069 menu item now "Variable colour..." to hint...
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2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
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2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences
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2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon...
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2018-01-30 gmungocJAL-2897 formatting change only prior to functional...
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2018-01-29 gmungocMerge branch 'feature/JAL-2759' of https://source.jalview...
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2018-01-29 gmungocJAL-1270 testPadGaps() added
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2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressions...
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2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2018-01-18 gmungocJAL-2810 JAL-2886 i18n
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2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved...
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2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retrieved...
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2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Parent...
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2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load
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2018-01-10 gmungocJAL-2865 unhelpful System.gc() calls removed
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2018-01-10 gmungocJAL-1793 update spike branch to latest
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2018-01-10 gmungocJAL-2791 ignore feature type visibility in getColor()
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2018-01-09 gmungocJAL-2843 test roundtrip of feature colours and filters...
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2018-01-09 gmungocJAL-2843 unit tests for writing filters to Jalview...
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2018-01-09 gmungocJAL-2843 unit tests for Save/Load colours and filters...
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2018-01-09 gmungocJAL-2808 small tweaks to api / Javadoc
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2018-01-08 gmungocJAL-2069 fix setting initial value of slider from threshold
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2017-12-14 gmungocJAL-2843 missed Castor class
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2017-12-14 gmungocJAL-2843 save/restore colour feature by attribute,...
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2017-12-14 gmungocJAL-2879 save/restore feature sub-attributes in Jalview...
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2017-12-14 gmungocJAL-2843 missed Castor class
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2017-12-14 gmungocJAL-2843 and Castor metadata file for latest changes
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2017-12-14 gmungocJAL-2843 schema and code changes to save colour by...
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2017-12-13 gmungocJAL-2843 add isByAttribute to interface for convenience
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2017-12-11 gmungocJAL-2843 add colour by attribute, and no value colour...
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2017-12-08 gmungocJAL-2843 example filters added
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2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview...
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2017-12-08 gmungocJAL-2843 refactor / tidy for feature filter input/output
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2017-12-08 gmungocJAL-2843 methods relocated
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2017-12-08 gmungocJAL-2843 toStableString, fromString for Jalview features...
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2017-12-08 gmungocJAL-2843 FeatureRenderer.getFeatureFilters returns...
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2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest
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2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF
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2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence referenced...
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2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement...
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2017-12-04 gmungocJAL-2835 small refactor to only extract transcript...
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2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term...
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2017-12-01 gmungocJAL-2835 refactored to extract specific consequence...
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2017-12-01 gmungocJAL-2792 sort feature attributes for output, not for...
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2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added
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2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig...
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2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper
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2017-11-28 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added
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