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JAL-1432 updated copyright notices
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
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2014-01-29 Jim ProcterJAL-1432 AUTHORS file and updated authors properties...
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2014-01-29 Jim ProcterJAL-1432 update dependency and licensing info
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2014-01-29 Jim ProcterJAL-1432 bump version
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2014-01-29 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-29 Jim ProcterJAL-1400 added explanation about signed/unsigned applet...
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2014-01-29 Jim ProcterJAL-970 JAL-1400 fixed layout
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 reinstate the PDBfile parameter
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-1400 sign the jnlp for arbitrary memory
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 JAL-1400 only sign specific jar artefacts for...
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 neater boilerplate link to signed/unsigned...
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2014-01-28 Jim ProcterJAL-957 shorten title for linked applets example
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2014-01-28 Jim ProcterJAL-957 removed cruft on appletParameters page
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 make a copy of the applet/Jmol applet jars...
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2014-01-28 Jim ProcterMerge branch 'JAL-1400_sandboxapp' into JAL-957_jbake
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2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
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2014-01-28 Jim ProcterJAL-957 permissions property for example pages (jbake...
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2014-01-28 Jim ProcterJAL-957 unsigned applet demo pages created with jbake
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2014-01-28 Jim ProcterJAL-957 tidier source and ensure permissions is explicitly...
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2014-01-28 Jim ProcterJAL-957 new jbake-generated example pages
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2014-01-28 Jim ProcterJAL-957 instructions on runnning Jbake to regenerate...
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2014-01-28 Jim ProcterJAL-957 standardise formatting for example preamble
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2014-01-28 Jim ProcterJAL-957 standard link to signed/unsigned demo pages...
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2014-01-28 Jim ProcterJAL-957 tidy jbake directory
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2014-01-27 Jim ProcterMerge branch 'JAL-1430_mfa_ext' into Release_2_8_Branch
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2014-01-27 Jim ProcterJAL-1430 mfa added as a known extension for FASTA files
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2014-01-17 Jim ProcterJAL-957 first attempt to build examples with jbake
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2014-01-14 Jim ProcterMerge branch 'WIP_fix_JAL-1423' into Release_2_8_Branch
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2014-01-14 Jim ProcterJAL-1400 specify minimum 1.6 JRE
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2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into Release_2_8_Branch
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2014-01-13 Jim ProcterJAL-1422 update any existing configuration to replace...
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2014-01-13 Jim ProcterJAL-1422 change default link to EMBL-EBI Search
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2014-01-13 Jim ProcterJAL-1422 remove SRS and expasy links and replace with...
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2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into Release_2_8_Branch
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2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handling...
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 update manifest in the JmolApplet jar
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 disable 'Permissions' in manifest to see if...
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim Proctersandbox permissions
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2013-11-26 Jim Procternew required parameter for deploying the applet
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 add codebase and caller allowable codebase
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 specified SHA1WithRSA for sig algorithm and...
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2013-11-25 Jim Procteradivce from http://ant.apache.org/manual/Tasks/signjar...
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 need to explicitly specify SHA1 for java 6...
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 supress dependency warnings from proguard
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 latest version of proguard needed for Java...
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2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_Branch
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2013-11-07 Jim ProcterJAL-1286 additional tests to ensure that non-GZ files...
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2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens...
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2013-11-07 Jim ProcterJAL-1286 test input of gzip stream from local file
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2013-11-05 Jim ProcterJAL-1400 found a fix for the sandbox exception - need...
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2013-11-05 Jim Procterexperiment with reinstating the sandbox permissions
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2013-11-05 Jim ProcterJAL-1400 try putting explicit domain for jalviewLite...
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2013-11-05 Jim ProcterJAL-1400 Always create indices for jar before signing
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2013-11-05 Jim ProcterJAL-1400 sign everything !
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2013-11-05 Jim ProcterJAL-1400 explicit security settings for applet
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2013-11-05 Jim ProcterJAL-1400 explicit security permissions for Desktop
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2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Release_2_...
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2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
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2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start...
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2013-10-11 Jim ProcterJAL-1114 javadoc
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2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable fields...
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2013-10-11 Jim ProcterJAL-1114 API javadoc
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2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences...
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2013-10-11 Jim ProcterJAL-1385 expose core view model methods in interface
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2013-07-12 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_Branch
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2013-07-12 Jim ProcterJAL-1347 RNA Structure consensus follows the alignment...
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2013-07-12 Jim ProcterJAL-1347 flow control for display of profile data is...
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2013-07-11 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_Branch
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2013-07-11 Jim ProcterJAL-1347 identify and set rendering settings for consensus...
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2013-07-11 Jim ProcterJAL-1347 refactor logic for setting display flags for...
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2013-07-11 Jim ProcterJAL-1347 make it efficient to call getConsensus to...
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2013-07-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_Branch
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2013-07-08 Jim Proctermake sure 'example alignment' can be found in documentation
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2013-07-07 Jim ProcterMerge branch 'structures/JAL-1016' into Release_2_8_Branch
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2013-07-07 Jim ProcterJAL-1345 - set nSeconds arg for http://chemapps.stolaf...
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2013-07-07 Jim ProcterJAL-1016 Instruct user to report situations where the...
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2013-07-07 Jim ProcterJAL-1332 make SSM context discovery safer (particularly...
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2013-07-07 Jim ProcterJAL-583 refactor todo about separating code to construct...
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2013-07-07 Jim Procterfix for JAL-1016 - wait around until we have a complete...
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2013-07-07 Jim ProcterJAL-1016 - do our assertions immediatly
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2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into Release_2_8_Branch
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2013-06-23 Jim ProcterJAL-1230 update alignment state for annotation edits...
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2013-06-23 Jim ProcterJAL-1230 proxy method for synchronising internal AlignmentI...
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2013-06-23 Jim ProcterJAL-1230 simplify initialisation of consensus, conservation...
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2013-06-23 Jim ProcterMerge branch 'bug/JAL-1230' into Release_2_8_Branch
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2013-06-23 Jim ProcterMerge commit '72c628b' into Release_2_8_Branch
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2013-06-22 Jim ProcterMerge branch 'feature/JAL-1330' into Release_2_8_Branch
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