| 2017-06-20 |
gmungoc | JAL-2526 better names for fields
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commit | commitdiff | tree |
| 2017-06-20 |
gmungoc | JAL-2480 make fiels of Range private
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commit | commitdiff | tree |
| 2017-06-15 |
gmungoc | JAL-2541 revised cut with features (work in progress)
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commit | commitdiff | tree |
| 2017-06-14 |
gmungoc | JAL-2598 Sequence.getSequence return a copy of the...
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commit | commitdiff | tree |
| 2017-06-13 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-06-12 |
gmungoc | JAL-2577 mirror select/hide by annotation in split...
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commit | commitdiff | tree |
| 2017-06-12 |
gmungoc | JAL-2577 mirror hide/select columns by annotation across...
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commit | commitdiff | tree |
| 2017-06-09 |
gmungoc | JAL-2480 tidy javadoc
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commit | commitdiff | tree |
| 2017-06-09 |
gmungoc | JAL-2593 avoid redundant rendering of co-located features
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commit | commitdiff | tree |
| 2017-06-08 |
gmungoc | JAL-2526 correct boundary conditions for sequence left...
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commit | commitdiff | tree |
| 2017-06-08 |
gmungoc | JAL-2526 cache first/last residue column positions...
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commit | commitdiff | tree |
| 2017-06-08 |
gmungoc | JAL-2526 setStatusMessage avoid redundant findPosition...
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commit | commitdiff | tree |
| 2017-06-08 |
gmungoc | JAL-2526 reuse findIndex result if start==end
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commit | commitdiff | tree |
| 2017-06-07 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-06-06 |
gmungoc | JAL-2526 less stringent test for invalid cursor
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commit | commitdiff | tree |
| 2017-06-05 |
gmungoc | JAL-2505 comments updated
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commit | commitdiff | tree |
| 2017-06-05 |
gmungoc | JAL-2480 remove redundant method, further test coverage
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commit | commitdiff | tree |
| 2017-06-05 |
gmungoc | JAL-2505 explicit (and final) contactFeature property
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commit | commitdiff | tree |
| 2017-06-05 |
gmungoc | Merge branch 'features/JAL-2526sequenceCursor' into
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commit | commitdiff | tree |
| 2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into
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commit | commitdiff | tree |
| 2017-06-05 |
gmungoc | Merge branch 'features/JAL-2446NCList' into
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commit | commitdiff | tree |
| 2017-06-05 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features...
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commit | commitdiff | tree |
| 2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features...
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commit | commitdiff | tree |
| 2017-06-02 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-06-02 |
gmungoc | JAL-2526 additional tests for findPosition with/without...
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commit | commitdiff | tree |
| 2017-06-02 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features...
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commit | commitdiff | tree |
| 2017-06-01 |
gmungoc | JAL-2526 additional calls to sequenceChanged() after...
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commit | commitdiff | tree |
| 2017-06-01 |
gmungoc | JAL-2526 zapCursor() renamed sequenceChanged()
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commit | commitdiff | tree |
| 2017-06-01 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features...
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commit | commitdiff | tree |
| 2017-06-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-06-01 |
gmungoc | JAL-2754 Sequence.findFeatures(fromCol, toCol)
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commit | commitdiff | tree |
| 2017-06-01 |
gmungoc | JAL-2563 JAL-2547 amended unit tests for amended setStatusMe...
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commit | commitdiff | tree |
| 2017-05-31 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features...
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commit | commitdiff | tree |
| 2017-05-31 |
gmungoc | JAL-2483 JAL-2575 don't sort newly discovered features
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commit | commitdiff | tree |
| 2017-05-31 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features...
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commit | commitdiff | tree |
| 2017-05-31 |
gmungoc | JAL-2574 preparation for Sequence.findFeatures(col1...
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commit | commitdiff | tree |
| 2017-05-31 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-31 |
gmungoc | JAL-2547 handle contact features 'around' a gap correctly
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commit | commitdiff | tree |
| 2017-05-30 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features...
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commit | commitdiff | tree |
| 2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-30 |
gmungoc | JAL-2547 tooltip/AmendFeatures on gap straddled by...
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commit | commitdiff | tree |
| 2017-05-30 |
gmungoc | Merge branch 'features/JAL-2446NCList' into features...
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commit | commitdiff | tree |
| 2017-05-30 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-30 |
gmungoc | JAL-2570 don't zap group colour scheme when mapping...
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commit | commitdiff | tree |
| 2017-05-30 |
gmungoc | JAL-2526 first draft of findIndex/findPosition with...
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commit | commitdiff | tree |
| 2017-05-29 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-29 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-29 |
gmungoc | JAL-2526 Sequence.findPositions to get residue positions...
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commit | commitdiff | tree |
| 2017-05-26 |
gmungoc | JAL-2290 no update if no change of residue JAL-2547...
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commit | commitdiff | tree |
| 2017-05-26 |
gmungoc | JAL-2480 move ContiguousI and Range to jalview.datamodel
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commit | commitdiff | tree |
| 2017-05-25 |
gmungoc | JAL-2557 removal of Sequence.sequenceFeatures
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commit | commitdiff | tree |
| 2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust constructo...
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commit | commitdiff | tree |
| 2017-05-25 |
gmungoc | JAL-2505 simplifying number of SequenceFeature constructors...
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commit | commitdiff | tree |
| 2017-05-25 |
gmungoc | JAL-2505 removed SequenceFeature constructor JAL-1641...
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commit | commitdiff | tree |
| 2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2505 make SequenceFeature type, begin, end, featureGroup...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2506 relocate Uniprot binding classes, bind to...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2505 remove setters for SequenceFeature.begin,end...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2529 add object_type=cdna to EnsemblCdna parameters
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | Merge branch 'bug/JAL-2541cutWithFeatures' into features...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2505 JAL-2542 SequenceFeatures.shift() to shift...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2542 correct adjustment of sequence features for...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2505 delete and readd modified feature after Cut...
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548...
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 test coverage for printGffFormat before refactoring
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 unit tests for getFeaturesForGroup
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2547 don't show features in tooltip over a gap
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in...
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 improved lookup of features for Export Features...
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2480 methods to get features for group
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2505 use setter not direct access to sf.description
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2505 updates after conflicting merge of JAL-2504
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2504 update the right feature colour when creating...
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2544 unit tests for sort by feature score
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2544 check feature overlaps selection region
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2543 identify as JSON before HTML
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct...
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2490 add non-positional feature case to test prior...
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2480 always include all non-positional features...
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2526 removed redundant call to Sequence.findPosition()
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2490 refactored test for 'hasFeatures'
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2544 only include features in selected columns...
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2490 performant lookup of features for sorting
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2490 only count sequences where feature overlap...
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2505 unit test for sort by feature density, Javadoc
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2490 initial unit tests prior to refactoring
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2490 lookup sequence features for "labelClass"
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2490 lookup features at each column position
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2543 html-encode quote characters in feature description
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2490 retrieve visible features only
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2541 initial unit tests for edit cut relocate features
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2541 fix to initSeqFrom (and minor code tidy);...
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commit | commitdiff | tree |
| 2017-05-17 |
gmungoc | JAL-2504 use (and update) defaults for new feature...
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commit | commitdiff | tree |
| 2017-05-17 |
gmungoc | Merge branch 'develop' into bug/JAL-2510amendFeatures
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 unreachable code (for many years) removed
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 refactored method removed
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commit | commitdiff | tree |
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