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2010-09-02	jprocter	fix occasional arrayIndexOutOfBounds when sequences...	commit \| commitdiff \| tree
2010-09-02	jprocter	debugged option changed logic and layout	commit \| commitdiff \| tree
2010-09-02	jprocter	update gui in gui thread - not structure loading thread	commit \| commitdiff \| tree
2010-09-02	jprocter	increment if strings dont match	commit \| commitdiff \| tree
2010-09-02	jprocter	1.1 compatibility	commit \| commitdiff \| tree
2010-09-02	jprocter	re-implemented user prefs logic - still need to debug...	commit \| commitdiff \| tree
2010-08-31	jprocter	notes re JAL-623 and JAL-583, new api methods for adding...	commit \| commitdiff \| tree
2010-08-31	jprocter	notes re JAL-629	commit \| commitdiff \| tree
2010-08-31	jprocter	fixed various null pointer exceptions that occur when...	commit \| commitdiff \| tree
2010-08-31	jprocter	fixed various null pointer exceptions that occur when...	commit \| commitdiff \| tree
2010-08-31	jprocter	added URL display for parameters/options and debugged...	commit \| commitdiff \| tree
2010-08-31	jprocter	utilities for cloning and manipulating JabaWS parameter...	commit \| commitdiff \| tree
2010-08-27	jprocter	refactored seq/str binding methods and ensured that...	commit \| commitdiff \| tree
2010-08-27	jprocter	patch for structures with multiple models, and refactored...	commit \| commitdiff \| tree
2010-08-27	jprocter	1.2 compatibility	commit \| commitdiff \| tree
2010-08-27	jprocter	revised sequence/structure binding so one structure...	commit \| commitdiff \| tree
2010-08-27	jprocter	revised sequence/structure binding so one structure...	commit \| commitdiff \| tree
2010-08-27	jprocter	patch re http://issues.jalview.org/browse/JAL-583 ...	commit \| commitdiff \| tree
2010-08-25	jprocter	update to Jmol 12.1.5 (will become 12.2.X when released)	commit \| commitdiff \| tree
2010-08-25	jprocter	applet now requires java 1.5 minimum (jmol 12.1.xx...	commit \| commitdiff \| tree
2010-08-25	jprocter	update to Jmol 12.1.5 (will become 12.2.X when released)	commit \| commitdiff \| tree
2010-08-25	jprocter	init Jmol with 'SmarterJmolAdapter'	commit \| commitdiff \| tree
2010-08-25	jprocter	correct initing of JmolViewer to avoid security exception...	commit \| commitdiff \| tree
2010-08-25	jprocter	excluded methods related to broken Jmol applet binding...	commit \| commitdiff \| tree
2010-08-25	jprocter	excluded methods related to broken Jmol applet binding...	commit \| commitdiff \| tree
2010-08-23	jprocter	ensure template InstallAnywhere build file is always...	commit \| commitdiff \| tree
2010-08-20	jprocter	avoid race condition by setting sequence logo flag...	commit \| commitdiff \| tree
2010-08-20	jprocter	rollback to 1.58 - since excludes are unnecessary	commit \| commitdiff \| tree
2010-08-20	jprocter	broken xml ? (could be old ant issue)	commit \| commitdiff \| tree
2010-08-20	jprocter	complete the sequence-structure mapping details. *...	commit \| commitdiff \| tree
2010-08-20	jprocter	refactor jmol api so it doesn't clash with Swing component...	commit \| commitdiff \| tree
2010-08-20	jprocter	check that we have mappings before trying to broadcast...	commit \| commitdiff \| tree
2010-08-20	jprocter	(probably unnecessary) explicit inclusion of jalview...	commit \| commitdiff \| tree
2010-08-20	jprocter	refactored external structure viewer binding API calls...	commit \| commitdiff \| tree
2010-08-20	jprocter	wrapped code from URL retrieval tester as a function...	commit \| commitdiff \| tree
2010-08-20	jprocter	improved debug output when Jmol viewer creation fails	commit \| commitdiff \| tree
2010-08-20	jprocter	extend jmol binding handles selection events and add...	commit \| commitdiff \| tree
2010-08-20	jprocter	binding between JalviewLite alignment windows and some...	commit \| commitdiff \| tree
2010-08-18	jprocter	JAL-617 - new menu items for exporting current view...	commit \| commitdiff \| tree
2010-08-18	jprocter	output the eigenvector matrix in full: JAL-616	commit \| commitdiff \| tree
2010-08-18	jprocter	JAL-612 - catch hidden OOM related to filling in cut...	commit \| commitdiff \| tree
2010-08-18	jprocter	new appletlib path for jars specific to the applet	commit \| commitdiff \| tree
2010-08-18	jprocter	new appletlib path for jars specific to the applet	commit \| commitdiff \| tree
2010-08-18	jprocter	source level now 1.5	commit \| commitdiff \| tree
2010-08-18	jprocter	source level now 1.5	commit \| commitdiff \| tree
2010-08-18	jprocter	source level now 1.5	commit \| commitdiff \| tree
2010-08-18	jprocter	new appletlib path for jars specific to the applet	commit \| commitdiff \| tree
2010-08-18	jprocter	update Jmol to 12.0.6	commit \| commitdiff \| tree
2010-08-18	jprocter	1.5 annotation removal	commit \| commitdiff \| tree
2010-08-18	jprocter	update jmol instance	commit \| commitdiff \| tree
2010-08-18	jprocter	thread safe construction of Jmol instance and hack...	commit \| commitdiff \| tree
2010-08-18	jprocter	refactor to abstract jmol/jalview binding and applet...	commit \| commitdiff \| tree
2010-08-18	jprocter	code design comment	commit \| commitdiff \| tree
2010-08-18	jprocter	1.5 annotation fix and thread safe menu update	commit \| commitdiff \| tree
2010-08-18	jprocter	refactor to jalview.api methods	commit \| commitdiff \| tree
2010-08-18	jprocter	1.5 annotation fix	commit \| commitdiff \| tree
2010-08-18	jprocter	colour menu items are in same radiobutton group	commit \| commitdiff \| tree
2010-08-18	jprocter	cutn'paste fix so rna residue chains are assembled...	commit \| commitdiff \| tree
2010-08-13	jprocter	improved parameter set store/save/rename logic and...	commit \| commitdiff \| tree
2010-08-11	jprocter	jaba ws client revision 2680	commit \| commitdiff \| tree
2010-08-11	jprocter	reverted dodgy test code	commit \| commitdiff \| tree
2010-08-11	jprocter	improved dialog layout and flow and fixed switching...	commit \| commitdiff \| tree
2010-08-11	jprocter	ask user if they want to run the JabaWS tester on new...	commit \| commitdiff \| tree
2010-08-06	jprocter	render jnlp artefacts for 1G and 2G machines (jalview_1G...	commit \| commitdiff \| tree
2010-08-06	jprocter	interactive/batch mode test for groovy scripting (See...	commit \| commitdiff \| tree
2010-08-04	jprocter	ensure that both null and undefined colourscheme names...	commit \| commitdiff \| tree
2010-08-04	jprocter	reorganised colourscheme enumeration to make it easier...	commit \| commitdiff \| tree
2010-08-02	jprocter	jabaws is the new jaba!	commit \| commitdiff \| tree
2010-07-21	jprocter	jaba!=jws2	commit \| commitdiff \| tree
2010-07-21	jprocter	URLs that begin with javascript: are opened in the...	commit \| commitdiff \| tree
2010-07-20	jprocter	less ambiguous feature style description	commit \| commitdiff \| tree
2010-07-20	jprocter	removed 'method notes' comment in job output.	commit \| commitdiff \| tree
2010-07-20	jprocter	update to Jaba_r1 minimal client distribution, and...	commit \| commitdiff \| tree
2010-07-11	jprocter	wrong config string	commit \| commitdiff \| tree
2010-07-11	jprocter	jaba on classpath	commit \| commitdiff \| tree
2010-07-11	jprocter	no tooltip and cleaner parameter layout	commit \| commitdiff \| tree
2010-07-11	jprocter	divide services by host within the menu	commit \| commitdiff \| tree
2010-07-11	jprocter	jaba is the new name.	commit \| commitdiff \| tree
2010-07-01	jprocter	default public service URL	commit \| commitdiff \| tree
2010-06-29	jprocter	jmol 12 patch - ensure we replace the correct filename...	commit \| commitdiff \| tree
2010-06-29	jprocter	upgrading structure/sequence binding so that a structure...	commit \| commitdiff \| tree
2010-06-29	jprocter	new ajax api methods for linking existing jmol viewers...	commit \| commitdiff \| tree
2010-06-29	jprocter	interfaces implemented by jalview renderers	commit \| commitdiff \| tree
2010-06-29	jprocter	proxy interface for structure viewers that jalview...	commit \| commitdiff \| tree
2010-06-29	jprocter	new abstract proxy for use by applet and application	commit \| commitdiff \| tree
2010-06-29	jprocter	upgrade to InstallAnywhere 2010 and ensure minimum...	commit \| commitdiff \| tree
2010-06-29	jprocter	patch for npe that occurs for importing Jalview projects...	commit \| commitdiff \| tree
2010-06-29	jprocter	typo bugfix	commit \| commitdiff \| tree
2010-06-29	jprocter	catch OOM earlier * JAL-595	commit \| commitdiff \| tree
2010-06-28	jprocter	drop down selection of different parameter sets	commit \| commitdiff \| tree
2010-06-27	jprocter	edit jws2 job parameters before running job	commit \| commitdiff \| tree
2010-06-22	jprocter	prototype - implementation in progress JAL-591	commit \| commitdiff \| tree
2010-06-21	jprocter	set program name to service type (see related issues...	commit \| commitdiff \| tree
2010-06-21	jprocter	organisation by host and service type	commit \| commitdiff \| tree
2010-06-21	jprocter	generic action text method	commit \| commitdiff \| tree
2010-06-21	jprocter	ensure service menu is rebuilt after update listeners...	commit \| commitdiff \| tree
2010-06-19	jprocter	2.6 docs	commit \| commitdiff \| tree
2010-06-19	jprocter	new web services preference tab (JAL-589)	commit \| commitdiff \| tree
2010-06-19	jprocter	rejigged change support to make it (more) reliable	commit \| commitdiff \| tree
2010-06-18	jprocter	new jmol/pdb relates api calls	commit \| commitdiff \| tree
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