git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-2305 comments re testFindXrefSequences_withFetch is failing - looks like test...
2022-02-03 Jim ProcterJAL-2305 comments re testFindXrefSequences_withFetch...
commit | commitdiff | tree
2022-01-26 Jim ProcterJAL-3806 JAL-3725 propagate relaxed criteria for stop...
commit | commitdiff | tree
2022-01-18 Jim ProcterJAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
commit | commitdiff | tree
2022-01-17 Jim ProcterJAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
commit | commitdiff | tree
2022-01-17 Jim ProcterJAL-3746 possible release date 1st Feb 2022
 commit | commitdiff | tree
2022-01-17 Jim ProcterJAL-3746 Release notes for patch JAL-3702 JAL-3915
 commit | commitdiff | tree
2022-01-17 Jim ProcterMerge branch 'bug/JAL-3703_saving_a_file_in_Windows_10_fails...
commit | commitdiff | tree
2022-01-06 Jim ProcterJAL-3746 update release history for 2.11.1.5 and 2...
commit | commitdiff | tree
2022-01-06 Jim ProcterMerge branch 'critical/JAL-3933_log4j_update_for_develop_bra...
commit | commitdiff | tree
2021-12-15 Jim ProcterJAL-3933 remove obsolete Castor logging configuration
 commit | commitdiff | tree
2021-12-15 Jim ProcterJAL-3933 configure root logger console appender to...
commit | commitdiff | tree
2021-12-13 Jim ProcterJAL-3829 isCanonical should by default be false - ensure...
commit | commitdiff | tree
2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model...
commit | commitdiff | tree
2021-12-13 Jim ProcterJAL-3929 preserve lowercase pdbid in group name for...
commit | commitdiff | tree
2021-12-08 Jim ProcterMerge branch 'to_merge/r2_11_2/JAL-3904_improved_alignpanelA...
commit | commitdiff | tree
2021-12-08 Jim ProcterJAL-3551 pymol docs - work in progress
 commit | commitdiff | tree
2021-12-08 Jim ProcterJAL-3929 don’t use the url encoded pdbId in feature...
commit | commitdiff | tree
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use...
commit | commitdiff | tree
2021-12-08 Jim ProcterJAL-3551 JAL-3931 view pymol commands/responses in...
commit | commitdiff | tree
2021-12-08 Jim ProcterJAL-3931 remove % and - from ids so Pymol doesn’t strip...
commit | commitdiff | tree
2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characters...
commit | commitdiff | tree
2021-12-02 Jim ProcterJAL-3904 use new AlignPanel API method
 commit | commitdiff | tree
2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the currently...
commit | commitdiff | tree
2021-11-19 Jim ProcterJAL-3926 disable autosearch by default
 commit | commitdiff | tree
2021-11-08 Jim ProcterJAL-3855 verify pdb suffix is preserved when locally...
commit | commitdiff | tree
2021-11-08 Jim ProcterJAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFile...
commit | commitdiff | tree
2021-11-08 Jim ProcterJAL-3855 try harder to ignore DNA/RNA only structures...
commit | commitdiff | tree
2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written
 commit | commitdiff | tree
2021-11-05 Jim ProcterJAL-3829 remove duplicate IDs in 3DBeacons generated...
commit | commitdiff | tree
2021-11-05 Jim ProcterJAL-3829 format and tidy up unused code
 commit | commitdiff | tree
2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the...
commit | commitdiff | tree
2021-11-05 Jim ProcterJAL-3875 fully reset filter combo-box when fetch 3d...
commit | commitdiff | tree
2021-11-03 Jim ProcterJAL-3915 JAL-3746 documentation for removed rnaview...
commit | commitdiff | tree
2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures
 commit | commitdiff | tree
2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures
 commit | commitdiff | tree
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still...
commit | commitdiff | tree
2021-11-02 Jim ProcterMerge branch 'develop' of https://source.jalview.org...
commit | commitdiff | tree
2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d...
commit | commitdiff | tree
2021-10-18 Jim ProcterMerge branch 'bug/r2_11_2/JAL-3904_structureviewermenu...
commit | commitdiff | tree
2021-10-18 Jim ProcterJAL-3905 Fix: wait for response when sending mouseovers...
commit | commitdiff | tree
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional...
commit | commitdiff | tree
2021-10-18 Jim ProcterJAL-3904 failing test
 commit | commitdiff | tree
2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view...
commit | commitdiff | tree
2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config
 commit | commitdiff | tree
2021-10-01 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
 commit | commitdiff | tree
2021-10-01 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
commit | commitdiff | tree
2021-10-01 Jim ProcterJAL-3829 3d beacons logo - misi varadi gave permission...
commit | commitdiff | tree
2021-10-01 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
 commit | commitdiff | tree
2021-10-01 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
commit | commitdiff | tree
2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking button...
commit | commitdiff | tree
2021-10-01 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
 commit | commitdiff | tree
2021-09-30 Jim ProcterMerge branch 'bug/JAL-3885_sequence_fetched_not_displaying_P...
commit | commitdiff | tree
2021-09-29 Jim ProcterJAL-3884 squish alarming but harmless errors when uniprot...
commit | commitdiff | tree
2021-09-29 Jim ProcterJAL-3881 split on any nonalphanumeric symbol (plus...
commit | commitdiff | tree
2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any...
commit | commitdiff | tree
2021-09-27 Jim ProcterJAL-3746 update the example corefile for jalviewjs
 commit | commitdiff | tree
2021-09-24 Jim ProcterJAL-3829 open web page for 3d beacons structure by...
commit | commitdiff | tree
2021-09-24 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
 commit | commitdiff | tree
2021-09-24 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
 commit | commitdiff | tree
2021-09-24 Jim ProcterJAL-3821 data file for failing test
 commit | commitdiff | tree
2021-09-24 Jim ProcterJAL-3829 right click to view popup menu to show link...
commit | commitdiff | tree
2021-09-24 Jim ProcterJAL-3829 abstract essential TDB metadata from the user...
commit | commitdiff | tree
2021-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
 commit | commitdiff | tree
2021-09-23 Jim ProcterMerge branch 'features/r2_11_2/JAL-3821_reinstate_patch...
commit | commitdiff | tree
2021-09-23 Jim ProcterJAL-3821 less ambiguous base class name for EMBL and...
commit | commitdiff | tree
2021-09-23 Jim ProcterJAL-3821 ported to refactored FlatFile parser
 commit | commitdiff | tree
2021-09-23 Jim ProcterJAL-3821 failing test
 commit | commitdiff | tree
2021-09-23 Jim ProcterJAL-3692 JAL-3861 remove extra call to .parse() so...
commit | commitdiff | tree
2021-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
 commit | commitdiff | tree
2021-09-23 Jim ProcterMerge branch 'patch/JAL-3874_newJmolAndGradleDedup...
commit | commitdiff | tree
2021-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
 commit | commitdiff | tree
2021-09-21 Jim ProcterJAL-3746 release notes and what’s new for 2.11.2 -...
commit | commitdiff | tree
2021-09-21 Jim ProcterMerge branch 'doc/JAL-3746_Release_2_11_2' into develop
 commit | commitdiff | tree
2021-09-21 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
commit | commitdiff | tree
2021-09-21 Jim ProcterJAL-3829 - callback finessing - leave DBRefFetcher...
commit | commitdiff | tree
2021-09-21 Jim ProcterJAL-3829 prefix PDBe filters with PDBe to make clear...
commit | commitdiff | tree
2021-09-21 Jim ProcterJAL-3829 alternative UX: need to select 3d-beacons...
commit | commitdiff | tree
2021-09-21 Jim ProcterJAL-3829 ignore the fake ID generated when a PDB format...
commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 updated response for P01308
 commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 tests need to wait for dialog to be closed...
commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 TDBeacons fetcher needs a sequence with at...
commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 throw the exception even if it has no message
 commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 ensure nulls are not wildcards when retrieving...
commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 do better at detecting structure type, prompt...
commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 make sure structure data type reflects actual...
commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 store 3db metadata on PDBEntry so it can be...
commit | commitdiff | tree
2021-09-20 Jim ProcterJAL-3829 allow PDBEntry with file and ID with mismatching...
commit | commitdiff | tree
2021-09-17 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
 commit | commitdiff | tree
2021-09-17 Jim ProcterJAL-3079 JAL-3055 remember to reset font transform...
commit | commitdiff | tree
2021-09-17 Jim ProcterJAL-1260 FileFormat entry for EMBL/GENBANK: TODO: create...
commit | commitdiff | tree
2021-09-17 Jim ProcterJAL-3874 - replace Jmol with custom build of 14.31...
commit | commitdiff | tree
2021-09-17 Jim ProcterJAL-2226 transfer chain annotation when calcId, label...
commit | commitdiff | tree
2021-09-17 Jim ProcterJAL-2226 new method to search for annotation matching...
commit | commitdiff | tree
2021-09-17 Jim ProcterJAL-3829 belt and braces check to make sure there is...
commit | commitdiff | tree
2021-09-16 Jim ProcterMerge branch 'develop' into doc/JAL-3746_Release_2_11_2
 commit | commitdiff | tree
2021-09-16 Jim ProcterJAL-3794 X and N are counted as DNA characters, but...
commit | commitdiff | tree
2021-09-16 Jim ProcterJAL-3794 new test for recognition of protein or DNA...
commit | commitdiff | tree
2021-09-15 Jim ProcterMerge branch 'Jalview-JS/bug/JAL-3762_URLparamsOverrideInfoA...
commit | commitdiff | tree
2021-09-15 Jim ProcterJAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick
 commit | commitdiff | tree
2021-09-15 Jim ProcterJAL-3842 fix automatic what's new link for custom version...
commit | commitdiff | tree
next