| 2017-05-25 |
gmungoc | JAL-2050 make SequenceFeature.score final, adjust constructo...
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commit | commitdiff | tree |
| 2017-05-25 |
gmungoc | JAL-2505 simplifying number of SequenceFeature constructors...
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commit | commitdiff | tree |
| 2017-05-25 |
gmungoc | JAL-2505 removed SequenceFeature constructor JAL-1641...
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commit | commitdiff | tree |
| 2017-05-25 |
gmungoc | JAL-2490 test coverage of empty and null feature group...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2505 make SequenceFeature type, begin, end, featureGroup...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2506 relocate Uniprot binding classes, bind to...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2505 remove setters for SequenceFeature.begin,end...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2529 add object_type=cdna to EnsemblCdna parameters
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | Merge branch 'bug/JAL-2541cutWithFeatures' into features...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2505 JAL-2542 SequenceFeatures.shift() to shift...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2542 correct adjustment of sequence features for...
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commit | commitdiff | tree |
| 2017-05-24 |
gmungoc | JAL-2505 delete and readd modified feature after Cut...
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 find features for export as GFF, JAL-2548...
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 test coverage for printGffFormat before refactoring
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 unit tests for getFeaturesForGroup
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 tidy code and tests for feature export in...
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2490 improved lookup of features for Export Features...
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commit | commitdiff | tree |
| 2017-05-23 |
gmungoc | JAL-2480 methods to get features for group
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2505 use setter not direct access to sf.description
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2505 updates after conflicting merge of JAL-2504
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2504 update the right feature colour when creating...
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2544 unit tests for sort by feature score
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2544 check feature overlaps selection region
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2543 identify as JSON before HTML
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2546 JAL-2490 efficient lookup of features, correct...
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2490 add non-positional feature case to test prior...
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commit | commitdiff | tree |
| 2017-05-22 |
gmungoc | JAL-2480 always include all non-positional features...
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2526 removed redundant call to Sequence.findPosition()
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2490 refactored test for 'hasFeatures'
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2544 only include features in selected columns...
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2490 performant lookup of features for sorting
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2490 only count sequences where feature overlap...
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commit | commitdiff | tree |
| 2017-05-19 |
gmungoc | JAL-2505 unit test for sort by feature density, Javadoc
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2490 initial unit tests prior to refactoring
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2490 lookup sequence features for "labelClass"
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2490 lookup features at each column position
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2543 html-encode quote characters in feature description
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2490 retrieve visible features only
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2541 initial unit tests for edit cut relocate features
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commit | commitdiff | tree |
| 2017-05-18 |
gmungoc | JAL-2541 fix to initSeqFrom (and minor code tidy);...
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commit | commitdiff | tree |
| 2017-05-17 |
gmungoc | JAL-2504 use (and update) defaults for new feature...
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commit | commitdiff | tree |
| 2017-05-17 |
gmungoc | Merge branch 'develop' into bug/JAL-2510amendFeatures
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 unreachable code (for many years) removed
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 refactored method removed
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 set helix number as feature group in SequenceFeature
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2403 simplify instantiation / configuration of...
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 refactor to set type and group in SequenceFeature...
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2525 put in missing "transcript" feature type
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 additional tests/asserts prior to refactoring
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 set SequenceFeature group in constructor
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | JAL-2532 new feature types and colour changes from...
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | JAL-2490 use findFeatures() for efficient feature overlap...
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | JAL-2480 redundant code (from merge?) removed
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | JAL-2480 redundant code removed
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2490 performant findFeaturesAtRes
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2483 efficient lookup of feature types and groups...
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2525 get sequence features for Ontology term(s...
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2480 more efficient contains check on add; tidied...
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2480 java.util.RangeComparator renamed IntRangeComparator
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2480 efficient test for features present on sequence
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2480 renamed java.util.RangeComparator to IntRangeComparator
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-1632 correct i18n and NPE
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-2403 use preferred factory method to create score...
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-2480 include sequenceFeatureStore in createDatasetSequence
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-2483 JAL-2481 fixed findAllFeatures to handle null...
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-2505 use constructors to set (what will be) final...
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | JAL-2505 set type,desc,begin,end,group,score in SequenceFeature
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | JAL-2505 refactored SequenceFeature construction so...
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | JAL-1933 Spanish tooltips for annotation
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | JAL-1632 i18n for warning messages
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | Merge remote-tracking branch 'origin/bug/JAL-2515'...
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commit | commitdiff | tree |
| 2017-05-05 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScreenFont
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commit | commitdiff | tree |
| 2017-05-05 |
gmungoc | JAL-964 JAL-2510 update Feature Settings from Amend...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2506 allow graduated colour as default in new Sequence...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2510 ensure modified feature type is displayed
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2504 allow feature type to be specified for Create...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2505 delete and readd amended sequence feature
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2480 JAL-2505 guard against duplicating links
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2246 basic sanity test of fetching example accessions
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2246 test a Uniprot fetch
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2105 Ensembl REST now at 5.0
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2485 JAL-2246 test Uniprot FTS summary
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-1933 Spanish for Occupancy
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-2447 EXPERIMENTAL preference (option in Tools menu)
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-2499 inlined two 1-line methods
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside...
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
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