git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Merge branch 'features/JAL-2446NCList' into features/JAL-2526sequenceCursor
2017-06-02 gmungocMerge branch 'features/JAL-2446NCList' into features...
commit | commitdiff | tree
2017-06-02 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-06-02 gmungocJAL-2526 additional tests for findPosition with/without...
commit | commitdiff | tree
2017-06-01 gmungocJAL-2526 additional calls to sequenceChanged() after...
commit | commitdiff | tree
2017-06-01 gmungocJAL-2526 zapCursor() renamed sequenceChanged()
 commit | commitdiff | tree
2017-06-01 gmungocMerge branch 'features/JAL-2446NCList' into features...
commit | commitdiff | tree
2017-06-01 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-31 gmungocMerge branch 'features/JAL-2446NCList' into features...
commit | commitdiff | tree
2017-05-31 gmungocJAL-2483 JAL-2575 don't sort newly discovered features
 commit | commitdiff | tree
2017-05-31 gmungocMerge branch 'features/JAL-2446NCList' into features...
commit | commitdiff | tree
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1...
commit | commitdiff | tree
2017-05-31 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly
 commit | commitdiff | tree
2017-05-30 gmungocMerge branch 'features/JAL-2446NCList' into features...
commit | commitdiff | tree
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by...
commit | commitdiff | tree
2017-05-30 gmungocMerge branch 'features/JAL-2446NCList' into features...
commit | commitdiff | tree
2017-05-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-30 gmungocJAL-2570 don't zap group colour scheme when mapping...
commit | commitdiff | tree
2017-05-30 gmungocJAL-2526 first draft of findIndex/findPosition with...
commit | commitdiff | tree
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-29 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-29 gmungocJAL-2526 Sequence.findPositions to get residue positions...
commit | commitdiff | tree
2017-05-26 gmungocJAL-2290 no update if no change of residue JAL-2547...
commit | commitdiff | tree
2017-05-26 gmungocJAL-2480 move ContiguousI and Range to jalview.datamodel
 commit | commitdiff | tree
2017-05-25 gmungocJAL-2557 removal of Sequence.sequenceFeatures
 commit | commitdiff | tree
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust constructo...
commit | commitdiff | tree
2017-05-25 gmungocJAL-2505 simplifying number of SequenceFeature constructors...
commit | commitdiff | tree
2017-05-25 gmungocJAL-2505 removed SequenceFeature constructor JAL-1641...
commit | commitdiff | tree
2017-05-25 gmungocJAL-2490 test coverage of empty and null feature group...
commit | commitdiff | tree
2017-05-24 gmungocJAL-2505 make SequenceFeature type, begin, end, featureGroup...
commit | commitdiff | tree
2017-05-24 gmungocJAL-2506 relocate Uniprot binding classes, bind to...
commit | commitdiff | tree
2017-05-24 gmungocJAL-2505 remove setters for SequenceFeature.begin,end...
commit | commitdiff | tree
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters
 commit | commitdiff | tree
2017-05-24 gmungocMerge branch 'bug/JAL-2541cutWithFeatures' into features...
commit | commitdiff | tree
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift...
commit | commitdiff | tree
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for...
commit | commitdiff | tree
2017-05-24 gmungocJAL-2505 delete and readd modified feature after Cut...
commit | commitdiff | tree
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548...
commit | commitdiff | tree
2017-05-23 gmungocJAL-2490 test coverage for printGffFormat before refactoring
 commit | commitdiff | tree
2017-05-23 gmungocJAL-2490 unit tests for getFeaturesForGroup
 commit | commitdiff | tree
2017-05-23 gmungocJAL-2547 don't show features in tooltip over a gap
 commit | commitdiff | tree
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in...
commit | commitdiff | tree
2017-05-23 gmungocJAL-2490 improved lookup of features for Export Features...
commit | commitdiff | tree
2017-05-23 gmungocJAL-2480 methods to get features for group
 commit | commitdiff | tree
2017-05-22 gmungocJAL-2505 use setter not direct access to sf.description
 commit | commitdiff | tree
2017-05-22 gmungocJAL-2505 updates after conflicting merge of JAL-2504
 commit | commitdiff | tree
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-22 gmungocJAL-2504 update the right feature colour when creating...
commit | commitdiff | tree
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-22 gmungocJAL-2544 unit tests for sort by feature score
 commit | commitdiff | tree
2017-05-22 gmungocJAL-2544 check feature overlaps selection region
 commit | commitdiff | tree
2017-05-22 gmungocJAL-2543 identify as JSON before HTML
 commit | commitdiff | tree
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct...
commit | commitdiff | tree
2017-05-22 gmungocJAL-2490 add non-positional feature case to test prior...
commit | commitdiff | tree
2017-05-22 gmungocJAL-2480 always include all non-positional features...
commit | commitdiff | tree
2017-05-19 gmungocJAL-2526 removed redundant call to Sequence.findPosition()
 commit | commitdiff | tree
2017-05-19 gmungocJAL-2490 refactored test for 'hasFeatures'
 commit | commitdiff | tree
2017-05-19 gmungocJAL-2544 only include features in selected columns...
commit | commitdiff | tree
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting
 commit | commitdiff | tree
2017-05-19 gmungocJAL-2490 only count sequences where feature overlap...
commit | commitdiff | tree
2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc
 commit | commitdiff | tree
2017-05-18 gmungocJAL-2490 initial unit tests prior to refactoring
 commit | commitdiff | tree
2017-05-18 gmungocJAL-2490 lookup sequence features for "labelClass"
 commit | commitdiff | tree
2017-05-18 gmungocJAL-2490 lookup features at each column position
 commit | commitdiff | tree
2017-05-18 gmungocJAL-2543 html-encode quote characters in feature description
 commit | commitdiff | tree
2017-05-18 gmungocJAL-2490 retrieve visible features only
 commit | commitdiff | tree
2017-05-18 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-18 gmungocJAL-2541 initial unit tests for edit cut relocate features
 commit | commitdiff | tree
2017-05-18 gmungocJAL-2541 fix to initSeqFrom (and minor code tidy);...
commit | commitdiff | tree
2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature...
commit | commitdiff | tree
2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures
 commit | commitdiff | tree
2017-05-16 gmungocJAL-2505 unreachable code (for many years) removed
 commit | commitdiff | tree
2017-05-16 gmungocJAL-2505 refactored method removed
 commit | commitdiff | tree
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-16 gmungocJAL-2505 set helix number as feature group in SequenceFeature
 commit | commitdiff | tree
2017-05-16 gmungocJAL-2517 restore complex colour scheme on Cancel in...
commit | commitdiff | tree
2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of...
commit | commitdiff | tree
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeature...
commit | commitdiff | tree
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type
 commit | commitdiff | tree
2017-05-16 gmungocJAL-2505 additional tests/asserts prior to refactoring
 commit | commitdiff | tree
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor
 commit | commitdiff | tree
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-15 gmungocJAL-2532 new feature types and colour changes from...
commit | commitdiff | tree
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
 commit | commitdiff | tree
2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overlap...
commit | commitdiff | tree
2017-05-15 gmungocJAL-2480 redundant code (from merge?) removed
 commit | commitdiff | tree
2017-05-15 gmungocJAL-2480 redundant code removed
 commit | commitdiff | tree
2017-05-12 gmungocJAL-2490 performant findFeaturesAtRes
 commit | commitdiff | tree
2017-05-12 gmungocJAL-2483 efficient lookup of feature types and groups...
commit | commitdiff | tree
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s...
commit | commitdiff | tree
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied...
commit | commitdiff | tree
2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComparator
 commit | commitdiff | tree
2017-05-12 gmungocJAL-2480 efficient test for features present on sequence
 commit | commitdiff | tree
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeComparator
 commit | commitdiff | tree
2017-05-09 gmungocJAL-1632 correct i18n and NPE
 commit | commitdiff | tree
2017-05-09 gmungocJAL-2403 use preferred factory method to create score...
commit | commitdiff | tree
2017-05-09 gmungocJAL-2480 include sequenceFeatureStore in createDatasetSequence
 commit | commitdiff | tree
2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null...
commit | commitdiff | tree
next