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2021-12-14	Ben Soares	JAL-3933 updated slf4j to 1.7.32	commit \| commitdiff \| tree
2021-12-14	Ben Soares	JAL-3933 Updated log4j jars with log4j-2.16.0 and compatibil...	commit \| commitdiff \| tree
2021-04-26	Ben Soares	JAL-3248 Archived old README. Added new README to point...	commit \| commitdiff \| tree
2021-04-26	Ben Soares	JAL-3743 Fixed NullPointerExceptions happening with...	commit \| commitdiff \| tree
2021-04-19	Ben Soares	JAL-3833 cap the scaling used by HiDPISetting for incorrect...	commit \| commitdiff \| tree
2021-02-12	Ben Soares	JAL-3521 High quality file icons for jalview associated...	commit \| commitdiff \| tree
2021-02-10	Ben Soares	JAL-3521 Change grouped Jalview windows on linux taskbar...	commit \| commitdiff \| tree
2021-02-10	Ben Soares	JAL-3521 Changed wording of INSTALLATION in source...	commit \| commitdiff \| tree
2021-02-08	Ben Soares	JAL-3521 Adding a build_properties into sourceDist...	commit \| commitdiff \| tree
2021-02-08	Ben Soares	JAL-3521 Adjusted wrapper shell script and .desktop...	commit \| commitdiff \| tree
2021-02-06	Ben Soares	JAL-3251 debian build using maven, simplified build...	commit \| commitdiff \| tree
2021-02-06	Ben Soares	JAL-3521 Moved the debian build.gradle to utils/debian...	commit \| commitdiff \| tree
2021-01-26	Ben Soares	JAL-3521 Updating file opening marker to %u	commit \| commitdiff \| tree
2021-01-26	Ben Soares	JAL-3521 Debian mime-type and desktop helper files...	commit \| commitdiff \| tree
2020-11-19	Ben Soares	JAL-3521 removed unnecessary parts of the ext project...	commit \| commitdiff \| tree
2020-11-19	Ben Soares	JAL-3521 Minimal plugins and tasks needed to run tests...	commit \| commitdiff \| tree
2020-10-29	Ben Soares	JAL-3248 Fixed path typos in building.md/html and corrected...	commit \| commitdiff \| tree
2020-10-28	Ben Soares	JAL-3248 Added step to create the eclipse files before...	commit \| commitdiff \| tree
2020-10-15	Ben Soares	JAL-3611 added quotation marks for appdir argument...	commit \| commitdiff \| tree
2020-09-25	Ben Soares	JAL-3577 Removed default JALVIEW_VERSION from gradle...	commit \| commitdiff \| tree
2020-09-24	Ben Soares	JAL-3577 Quick fix adding quotation marks for findProperty...	commit \| commitdiff \| tree
2020-09-23	Ben Soares	JAL-3757 JAL-3689 Fixed checks for URLs by adding checks...	commit \| commitdiff \| tree
2020-09-23	Ben Soares	JAL-3633 ensure check both http:// or https:// for...	commit \| commitdiff \| tree
2020-09-15	Ben Soares	JAL-3718 Fixed getdown auto-update. This commit Getdown...	commit \| commitdiff \| tree
2020-09-15	Ben Soares	JAL-3718 force re-initialise of getdown.txt file when...	commit \| commitdiff \| tree
2020-09-03	gmungoc	JAL-3648 resize annotation panel after dragging to...	commit \| commitdiff \| tree
2020-09-02	Ben Soares	JAL-3280 Test for remote release build_properties file...	commit \| commitdiff \| tree
2020-09-01	Ben Soares	JAL-3280 fixes after CR-JAL-241. Now only checking...	commit \| commitdiff \| tree
2020-08-31	Ben Soares	JAL-3280 Pass appbase and appdir from getdown to jalvew...	commit \| commitdiff \| tree
2020-08-28	Ben Soares	JAL-3676 adding Axis and Castor loggging properties...	commit \| commitdiff \| tree
2020-08-27	Ben Soares	JAL-3676 Documentation in Help for Java Console, Logging...	commit \| commitdiff \| tree
2020-08-27	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into...	commit \| commitdiff \| tree
2020-08-18	Ben Soares	JAL-3718 Added digestonly key to getdown.txt to copy...	commit \| commitdiff \| tree
2020-08-18	Ben Soares	JAL-3676 Start of documentation in help pages logging...	commit \| commitdiff \| tree
2020-08-14	Ben Soares	JAL-3676 More explicit tooltip about resetting log...	commit \| commitdiff \| tree
2020-08-13	Ben Soares	JAL-3597 Increased heap passmark to <= 45MB and report...	commit \| commitdiff \| tree
2020-08-13	gmungoc	JAL-3597 slight tidying of code and Javadoc, passmark...	commit \| commitdiff \| tree
2020-08-13	gmungoc	JAL-3597 additional references nulled, bug in test...	commit \| commitdiff \| tree
2020-08-12	Ben Soares	JAL-3676 Removed BACKUPFILESPRESETENTRY logging for...	commit \| commitdiff \| tree
2020-08-05	Ben Soares	JAL-3691 Changed .toUppoerCase().startsWith(...) to...	commit \| commitdiff \| tree
2020-08-04	Ben Soares	JAL-3477 Improved command line arguments description...	commit \| commitdiff \| tree
2020-08-04	Ben Soares	JAL-3477 Added -help text for jvmmempc and jvmmemmax...	commit \| commitdiff \| tree
2020-08-04	Ben Soares	JAL-3477 added help documentation for executable jar...	commit \| commitdiff \| tree
2020-07-31	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into...	commit \| commitdiff \| tree
2020-07-08	Ben Soares	Merge branch 'bug/JAL-3541_cherry_pick_to_releases_Release_2...	commit \| commitdiff \| tree
2020-07-08	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into...	commit \| commitdiff \| tree
2020-07-08	Ben Soares	Merge branch 'task/JAL-3609_HiDPI_support_in_java'...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3608 ex stacktraces now go to Cache.log.debug	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3628 System.out/err -> Cache.log.info/error	commit \| commitdiff \| tree
2020-07-07	Ben Soares	Merge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3628 System.out/err -> Cache.log.info/error	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 ensure deletion of cloverReportDir	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 small fix for clover.xml location expected...	commit \| commitdiff \| tree
2020-07-07	soares	JAL-3541 added a property/variable style comment to...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 Fixed report path for build artifacts	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 Added mem setting and jvmArgs for cloverReporting	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 Individual tests now instrumented and reported...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 Helpers for running tests, and other commands...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 JavaExec tasks for cloverInstr and cloverReport...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 increase maxheapsize for test worker process	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 tidying build.gradle, delete cloverInstrDir...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 perhaps a better clean for clover. fixed	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 perhaps a better clean for clover	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3541 rejigged clover tasks very mildly	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3685 Fixed single quotes in formatMessage messages	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	Merge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	Merge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	JAL-3676 improvement for visual selection of console...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	Merge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	JAL-3628 improvement for visual selection of console...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	JAL-3628 Fix for slightly incorrect boolean usage to...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	JAL-3628 Even more Cache.log.debug statements	commit \| commitdiff \| tree
2020-07-04	Ben Soares	JAL-3628 More Cache.log.debug statements	commit \| commitdiff \| tree
2020-07-02	Ben Soares	JAL-3676 code review -- added non-listed Level into...	commit \| commitdiff \| tree
2020-07-01	Ben Soares	JAL-3609 Allow pass-through of setHiDPIScale property...	commit \| commitdiff \| tree
2020-07-01	Ben Soares	Merge branch 'task/JAL-3608_property_set_laf_and_tests_from_...	commit \| commitdiff \| tree
2020-06-30	Ben Soares	JAL-3676 Added Log Level ComboBox and Copy to Clipboard...	commit \| commitdiff \| tree
2020-06-24	Ben Soares	JAL-3667 Fixed single backupfile error deleting the...	commit \| commitdiff \| tree
2020-06-21	Ben Soares	JAL-3609 Report when scale setting used.	commit \| commitdiff \| tree
2020-06-21	Ben Soares	JAL-3609 New auto-scale 'formula' for linux HiDPI....	commit \| commitdiff \| tree
2020-06-08	Ben Soares	JAL-3628 Changed all file1.renameTo(file2) calls to...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Changed shortName to INTERNAL_ID	commit \| commitdiff \| tree
2020-04-05	Ben Soares	JAL-3577 Changed Windows internal ID to a new value...	commit \| commitdiff \| tree
2020-04-05	Ben Soares	JAL-3577 Changed Windows internal ID to a new value...	commit \| commitdiff \| tree
2020-04-02	Ben Soares	JAL-3577 First attempt at new folder names	commit \| commitdiff \| tree
2020-03-04	Ben Soares	JAL-3468 Fixed tests and added test for max-length...	commit \| commitdiff \| tree
2020-03-04	Ben Soares	JAL-3468 Obsessively fixed self-closing <br/> tags	commit \| commitdiff \| tree
2020-02-08	Ben Soares	JAL-3179 Version fix for taskTree gradle task in gradle 6	commit \| commitdiff \| tree
2018-08-27	Ben Soares	JAL-3061 / JAL-3053	commit \| commitdiff \| tree
2018-08-03	Ben Soares	JAL-3061	commit \| commitdiff \| tree
2018-08-03	Ben Soares	Merge branch 'bug/JAL-3061_RNA_secondary_structure_annotatio...	commit \| commitdiff \| tree
2018-08-02	Ben Soares	JAL-3053	commit \| commitdiff \| tree

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