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Merge branch 'develop' into Release_2_8_Branch
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch
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2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch...
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2012-10-04 jprocteravoid importing the mapping every time we parse a uniprot...
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2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources...
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2012-10-04 jprocterJAL-1188 - set the user agent to Jalview Desktop/$...
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2012-10-04 jprocterJAL-1064 JAL-671 make sure all buttons are disabled...
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2012-10-03 jprocterformatting
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2012-10-03 jprocterupdate release branch to v2.8
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2012-10-03 jprocterformatting
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2012-10-03 jprocterJAL-1026 - insert a sensible default for proxy so Jalview...
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2012-10-03 jprocterJAL-1183 JAL-343 - use dialog queue for JABA warning...
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2012-10-02 jprocterJAL-1185 patch NPE - create new group for subtree on...
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2012-10-01 jprocterJAL-1130 JAL-1137 messy hardcoding of author list to...
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2012-10-01 jprocterJAL-1130 JAL-1139 hardcode preferred height to logo...
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2012-10-01 jprocterJAL-1130 more robust loading code and different logos...
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2012-10-01 jprocterJAL-1183 dialog thread is only started after the splashscree...
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2012-10-01 jprocterJAL-1111 dialog flickers whilst example file starts...
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2012-10-01 jprocterJAL-1184 apparent deadlock when launching jalview on...
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2012-10-01 jprocterJAL-1183 showNews adds news discovery and display thread...
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2012-10-01 jprocterJAL-1183 use dialog queue for usage statistics prompt
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2012-10-01 jprocterJAL-1183 dialog queue
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2012-09-27 jprocterJAL-1030 patch typo
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2012-09-27 jprocterJAL-1179 - regression from JAL-1030 patch implicitly...
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2012-09-25 jprocterJAL-1031 allow empty selections to pass through to...
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2012-09-25 jprocterJAL-1179 note and patch for exceptions raised when...
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2012-09-25 jprocterJAL-1031 JAL-1032 if selection is non-null but empty...
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2012-09-25 jprocterJAL-1010 write validated value back to text field to...
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2012-09-25 jprocterJAL-970 JAL-1052 (comment about JAL-1140)
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2012-09-25 jprocterJAL-970 document interactive RNA secondary structure...
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2012-09-25 jprocterJAL-1173 - trap redraw buffer OOM errors. needs a test...
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2012-09-25 jprocterJAL-1173 try to catch OOMs when loading annotation...
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2012-09-25 jprocterJAL-1076 add note in documentation about Alt rather...
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2012-09-24 jprocterJAL-1130 transparent big version for JNLP and file...
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2012-09-24 jprocterJAL-958 revised applet parameter documentation to standardis...
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2012-09-24 jprocterformatting
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2012-09-24 jprocterJAL-958 normalise logo menu options in applet
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2012-09-24 jprocterJAL-958 enable logo display when normalise option selected
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2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme...
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2012-09-24 jprocteronly recalc group conservation after last sequence...
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2012-09-24 jprocterJAL-516 JAL-759 JAL-1066 group & group colourscheme...
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2012-09-24 jprocterJAL-958 JAL-966 refactor group/alignment associated...
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2012-09-24 jprocterJAL-1130 remove lossy logo versions
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2012-09-21 jprocterMerge branch 'JAL-1130' into develop
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2012-09-21 jprocterJAL-849 try harder and wait for longer for JABAWS to...
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2012-09-21 jprocterJAL-1171 refactor code to allow gui update for global...
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2012-09-21 jprocterJAL-1165 visual delay whilst results are processed.
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2012-09-21 jprocterJAL-1165 allow progress indicators on the web service...
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2012-09-21 jprocterJAL-1130 jalview spinning icon for web service dialog
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2012-09-21 jprocterJAL-1130 splashscreen logo
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2012-09-19 jprocterJAL-1130 new logo in help, splash screen and web services...
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2012-09-19 jprocterJAL-1130 new logo spinner in webservices status window
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2012-09-19 jprocterJAL-1130 large logo
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2012-09-19 jprocterJAL-1130 small rotating logo
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2012-09-19 jprocterJAL-1130 made SplashScreen able to be a dialog that...
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2012-09-19 jprocterJAL-1130 refactored standard hyperlink handler code...
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2012-09-19 jprocterJAL-1130 trial view of new logo on splashscreen.
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2012-09-19 jprocterJAL-1170 column and row positions confused in implementation...
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2012-09-07 jproctertodos
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2012-09-06 jprocterJAL-1065 documentation and image
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2012-09-06 jprocterJAL-958
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2012-09-06 jprocterJAL-842 documentation
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2012-09-06 jprocter2.7.1 squashed
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2012-09-06 jproctertypo
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2012-09-06 jprocterJAL-1065 whats new entry for tcoffee scores
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2012-09-06 jprocterfix image link
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2012-09-06 jprocterJAL-958 documented logo menu items
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2012-09-06 jproctermerge new 2.7.1 and 2.8 features into one
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2012-09-06 jproctertypo
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2012-09-06 jprocterJAL-958 flag indicating if visualization settings for...
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2012-09-06 jprocterJAL-958 store/recover normalised flag
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2012-09-06 jprocterJAL-958 store normalised flag in jalview project
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2012-09-06 jprocterPCA what's new and score matrix documentation page
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2012-09-06 jprocterJAL-1013 JAL-1167 JAL-1121 JAL-1125
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2012-09-06 jprocterJAL-1027 JAL-1167 documentation and patched DNA/RNA...
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2012-09-06 jprocterJAL-1013 - employ index parameter rather than hardcode...
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2012-09-06 jprocterJAL-1167 method and simple tests for printing score...
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2012-09-05 jprocterJAL-979 tidy up shmmr hardcoded WS definition
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2012-09-05 jprocterJAL-1136 give pre-existing custom settings a special...
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2012-09-05 jprocterformatting
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2012-09-05 jprocterpatch for NPE when no services are available to resolve...
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2012-09-05 jprocterJAL-975 null any existing preset if user has supplied...
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2012-09-05 jprocterJAL-1162 catch security exception and just use bare...
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2012-09-05 jprocterJAL-994 fix when sequence is too short and no jobs run
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2012-09-05 jprocterJAL-1111 allow news reader window to be moved even...
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2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
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2012-09-04 jproctertypo
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2012-09-04 jprocterJAL-976 documentation for disorder, AACon, ClustalO...
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2012-09-04 jprocterJAL-975 note about black colouring bug
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2012-09-04 jprocterJAL-1066 documentation for per-sequence annotation...
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2012-09-04 jprocterJAL-1060 new dialog box image
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2012-09-04 jprocterJAL-1060 documentation for new layout
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2012-09-04 jprocteroff by one for sequence associated annotation
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2012-09-04 jprocterunused variable
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2012-09-04 jprocterJAL-974 JRonn thresholds
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2012-09-03 jprocterJAL-591 adapt option layout to width of dialog box
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2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after...
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2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotation...
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2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor
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2012-09-03 jprocterJAL-1111 news reader shouldn't be modal.
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2012-09-03 jprocterJAL-1111 doh - helps if you pass modality flag onto...
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