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2020-07-07	Ben Soares	JAL-3628 System.out/err -> Cache.log.info/error	commit \| commitdiff \| tree
2020-07-07	Ben Soares	Merge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3628 System.out/err -> Cache.log.info/error	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3685 Fixed single quotes in formatMessage messages	commit \| commitdiff \| tree
2020-07-07	Ben Soares	JAL-3628 Fixed oddly worded and non-formatted error...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	Merge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	Merge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	JAL-3676 improvement for visual selection of console...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	Merge branch 'bug/JAL-3628_Unable_to_save_update_to_existing...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	JAL-3628 improvement for visual selection of console...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	JAL-3628 Fix for slightly incorrect boolean usage to...	commit \| commitdiff \| tree
2020-07-06	Ben Soares	JAL-3628 Even more Cache.log.debug statements	commit \| commitdiff \| tree
2020-07-04	Ben Soares	JAL-3628 More Cache.log.debug statements	commit \| commitdiff \| tree
2020-07-02	Ben Soares	JAL-3676 code review -- added non-listed Level into...	commit \| commitdiff \| tree
2020-06-30	Ben Soares	JAL-3676 Added Log Level ComboBox and Copy to Clipboard...	commit \| commitdiff \| tree
2020-06-24	Ben Soares	JAL-3667 Fixed single backupfile error deleting the...	commit \| commitdiff \| tree
2020-06-16	Ben Soares	JAL-3608 non-JS cherry-pick	commit \| commitdiff \| tree
2020-06-16	Ben Soares	JAL-3608 formatting save only	commit \| commitdiff \| tree
2020-06-16	Ben Soares	JAL-3608 formatting save only	commit \| commitdiff \| tree
2020-06-15	Ben Soares	JAL-3628 Changed other calls to renameTo to use BackupFiles...	commit \| commitdiff \| tree
2020-06-08	Ben Soares	JAL-3628 Changed all file1.renameTo(file2) calls to...	commit \| commitdiff \| tree
2020-04-21	Ben Soares	JAL-3577 changed default RELEASE dir in build.gradle...	commit \| commitdiff \| tree
2020-04-21	Ben Soares	JAL-3577 Added newer install dirs to the deletion list...	commit \| commitdiff \| tree
2020-04-09	Ben Soares	JAL-3588 Remove Examples folder in windows Program...	commit \| commitdiff \| tree
2020-04-07	Ben Soares	JAL-3577 improvement to non-release DMG background...	commit \| commitdiff \| tree
2020-04-07	Ben Soares	Merge branch 'task/JAL-3577_Jalview_Test_installers...	commit \| commitdiff \| tree
2020-04-07	Ben Soares	JAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEASE...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Fixed Jalview Programme Group in Windows menu...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Moved application Categories for freedesktop...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 removed debugging	commit \| commitdiff \| tree
2020-04-06	Ben Soares	Merge branch 'task/JAL-3577_Jalview_Test_installers...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Added existing and new Application IDs for...	commit \| commitdiff \| tree
2020-04-06	Ben Soares	JAL-3577 Changed shortName to INTERNAL_ID	commit \| commitdiff \| tree
2020-04-05	Ben Soares	JAL-3577 Changed Windows internal ID to a new value...	commit \| commitdiff \| tree
2020-04-05	Ben Soares	JAL-3577 Changed Windows internal ID to a new value...	commit \| commitdiff \| tree
2020-04-04	Ben Soares	JAL-3577 Added DS_Store for Test release to look like...	commit \| commitdiff \| tree
2020-04-03	Ben Soares	JAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE...	commit \| commitdiff \| tree
2020-04-03	Ben Soares	JAL-3577 cleaned up old DMG files. Added NON-RELEASE...	commit \| commitdiff \| tree
2020-04-02	Ben Soares	JAL-3577 First attempt at new folder names	commit \| commitdiff \| tree
2020-04-02	Ben Soares	JAL-3572 Added getdown Implementation-Version to getdown...	commit \| commitdiff \| tree
2020-04-02	Ben Soares	Merge branch 'improvement/JAL-3394_added_categories_to_unix_...	commit \| commitdiff \| tree
2020-03-27	soares	JAL-3225 updated essential files for eclipse project...	commit \| commitdiff \| tree
2020-03-26	Ben Soares	JAL-3225 Also look for local.properties in file named...	commit \| commitdiff \| tree
2020-03-26	soares	JAL-3225 This one file needed for project if git clean...	commit \| commitdiff \| tree
2020-03-26	Ben Soares	JAL-3225 All of .settings now gitignored. org.eclipse...	commit \| commitdiff \| tree
2020-03-25	Ben Soares	JAL-3248 Added instructions for downloading and configuring...	commit \| commitdiff \| tree
2020-03-19	Ben Soares	JAL-3541 increase maxheapsize for test worker process	commit \| commitdiff \| tree
2020-03-19	Ben Soares	JAL-3541 tidying build.gradle, delete cloverInstrDir...	commit \| commitdiff \| tree
2020-03-19	Ben Soares	JAL-3541 put org.gradle.jvmargs explicitly into gradle...	commit \| commitdiff \| tree
2020-03-18	Ben Soares	JAL-3541 merged cleanClover with develop	commit \| commitdiff \| tree
2020-03-18	Ben Soares	JAL-3541 perhaps a better clean for clover. fixed	commit \| commitdiff \| tree
2020-03-18	Ben Soares	JAL-3541 perhaps a better clean for clover	commit \| commitdiff \| tree
2020-03-17	Ben Soares	JAL-3541 rejigged clover tasks very mildly	commit \| commitdiff \| tree
2020-03-17	Ben Soares	Revert "JAL-3541 trying out previous cloverReport task"	commit \| commitdiff \| tree
2020-03-17	Ben Soares	JAL-3541 trying out previous cloverReport task	commit \| commitdiff \| tree
2020-03-12	Ben Soares	Merge commit '3fe5792cc63d53a5ace952bd68d3bb673c97f588...	commit \| commitdiff \| tree
2020-03-12	Ben Soares	JAL-3394 updated version if install4j gradle plugin	commit \| commitdiff \| tree
2020-03-12	Ben Soares	Merge branch 'develop' into improvement/JAL-3394_added_categ...	commit \| commitdiff \| tree
2020-03-09	Ben Soares	JAL-3227 slightly adapted download_jres.sh to make...	commit \| commitdiff \| tree
2020-03-09	Ben Soares	JAL-3394 Made Categories line configurable/readable...	commit \| commitdiff \| tree
2020-03-06	Ben Soares	JAL-3394 Added Categories=Science;Biology;Java; to...	commit \| commitdiff \| tree
2020-03-06	Ben Soares	JAL-3394 getdown jar files had not been re-compiled	commit \| commitdiff \| tree
2020-03-06	Ben Soares	JAL-3529 improved regex in Stockholm UNIPROT accession...	commit \| commitdiff \| tree
2020-03-04	Ben Soares	JAL-3468 small tidy	commit \| commitdiff \| tree
2020-03-04	Ben Soares	JAL-3468 improvement to feature description truncation...	commit \| commitdiff \| tree
2020-03-04	Ben Soares	JAL-3468 Fixed tests and added test for max-length...	commit \| commitdiff \| tree
2020-03-04	Ben Soares	JAL-3468 Obsessively fixed self-closing <br/> tags	commit \| commitdiff \| tree
2020-02-27	Ben Soares	JAL-3543 remove debugging output	commit \| commitdiff \| tree
2020-02-27	Ben Soares	Merge branch 'develop' into improvement/JAL-3543_dont_report...	commit \| commitdiff \| tree
2020-02-27	Ben Soares	JAL-3543 Conditional reporting of Install4j and Getdown...	commit \| commitdiff \| tree
2020-02-19	Ben Soares	Merge branch 'develop' into improvement/JAL-3449_add_install...	commit \| commitdiff \| tree
2020-02-19	Ben Soares	JAL-3289 Improved the name of the channel_launch.jvl...	commit \| commitdiff \| tree
2020-02-19	Ben Soares	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2020-02-19	Ben Soares	JAL-3337 Adding .settings/org.eclipse.jdt.core.jalview...	commit \| commitdiff \| tree
2020-02-19	Ben Soares	JAL-3449 helper task to perform getdown digest on any dir	commit \| commitdiff \| tree
2020-02-19	Ben Soares	JAL-3449 ensuring latest getdown jar files after merge	commit \| commitdiff \| tree
2020-02-18	Ben Soares	JAL-3449 merge from develop	commit \| commitdiff \| tree
2020-02-17	Ben Soares	JAL-3341 Increase number of lines looked at by test...	commit \| commitdiff \| tree
2020-02-17	Ben Soares	JAL-3289 Added option and documentation for a TEST...	commit \| commitdiff \| tree
2020-02-17	Ben Soares	JAL-3289 Updated doc/building.md to explain possible...	commit \| commitdiff \| tree
2020-02-17	Ben Soares	JAL-3252 download-jres.sh helper script for keeping...	commit \| commitdiff \| tree
2020-02-17	Ben Soares	JAL-3252 tgz unpacking no longer needed by getdown...	commit \| commitdiff \| tree
2020-02-14	Ben Soares	JAL-3394 A little streamlining and fixing of helper...	commit \| commitdiff \| tree
2020-02-14	Ben Soares	JAL-3394 remove no longer used files	commit \| commitdiff \| tree
2020-02-13	Ben Soares	JAL-3449 getdown resilience change to launcher classpath...	commit \| commitdiff \| tree
2020-02-13	Ben Soares	JAL-3227 helper shell scripts for setting up a build...	commit \| commitdiff \| tree
2020-02-13	Ben Soares	JAL-3449 fix a getdownAppDir error introduced in previous...	commit \| commitdiff \| tree
2020-02-13	Ben Soares	JAL-3449 More tidying of build.gradle for CHANNEL selection	commit \| commitdiff \| tree
2020-02-12	Ben Soares	JAL-3289 Updated doc/building.md to explain possible...	commit \| commitdiff \| tree
2020-02-12	Ben Soares	JAL-3523 No longer change CWD of getdown when invoked...	commit \| commitdiff \| tree
2020-02-08	Ben Soares	JAL-3179 Version fix for taskTree gradle task in gradle 6	commit \| commitdiff \| tree
2020-01-31	Ben Soares	JAL-3447 MSI installer for windows	commit \| commitdiff \| tree
2020-01-29	Ben Soares	JAL-3341 Increase number of lines looked at by test...	commit \| commitdiff \| tree
2020-01-24	Ben Soares	JAL-3394 Removed libjli.dylib symbolic link from embedded...	commit \| commitdiff \| tree
2020-01-24	Ben Soares	JAL-3394 Variable-ise output folders -- will work better...	commit \| commitdiff \| tree
2020-01-23	Ben Soares	JAL-3130 removed a debug message from build.gradle	commit \| commitdiff \| tree
2020-01-23	Ben Soares	JAL-3130 Improved locations of AdoptOpenJDK JRE downloads...	commit \| commitdiff \| tree
2020-01-17	Ben Soares	JAL-3252 Don't add java_location until we've got a...	commit \| commitdiff \| tree
2020-01-17	Ben Soares	JAL-3447 Minor improvement on file association creation	commit \| commitdiff \| tree
2020-01-10	Ben Soares	JAL-3477 getdown jars. This commit can be left out...	commit \| commitdiff \| tree
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