| 2016-01-28 |
gmungoc | JAL-1551 wrap enum declarations
|
commit | commitdiff | tree |
| 2016-01-28 |
gmungoc | JAL-1705 merge contiguous ranges when constructing...
|
commit | commitdiff | tree |
| 2016-01-27 |
gmungoc | JAL-1705 add exon name to features and render on peptide...
|
commit | commitdiff | tree |
| 2016-01-27 |
gmungoc | JAL-1705 use GET for single queries; set gene name...
|
commit | commitdiff | tree |
| 2016-01-26 |
gmungoc | JAL-1705 derive transcript sequences from gene sequence...
|
commit | commitdiff | tree |
| 2016-01-25 |
gmungoc | JAL-1705 EnsemblGene added, and related refactoring
|
commit | commitdiff | tree |
| 2016-01-25 |
gmungoc | JAL-1997 database browser support tooltip if available
|
commit | commitdiff | tree |
| 2016-01-23 |
gmungoc | JAL-1355 get dialog title from message bundle
|
commit | commitdiff | tree |
| 2016-01-23 |
gmungoc | JAL-1705 copy 'show sequence features' setting in ...
|
commit | commitdiff | tree |
| 2016-01-23 |
gmungoc | JAL-1705 todo comment re writing DBRefEntry/SequenceFeature...
|
commit | commitdiff | tree |
| 2016-01-23 |
gmungoc | JAL-1705 compute peptide variants from dna; add "consequence...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 transfer features to the dataset sequence...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 reworked Ensembl clients now fetching and...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-653 refactor / tidy
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-653 JAL-1705 set strand for GFF sequence feature
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 removed (only) usage of otherwise unused constant
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-653 comments/javadoc tidy only
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1796 parse ensembl genomic coordinates to set start...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 AlignmentUtils method renamed
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 ENSEMBL added, unused constants removed
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 features transferred to CDS sequence; makeExon...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 redundant comment removed
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 suppress jvsuffix (for sequence id matching...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 unused import removed
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 include dummy sequences in returned alignment
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 tidy and todo comment, no functional change
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 tests for amended toString
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 added isSequenceVariant(), commonly used SO...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 isFromForwardStrand added; toString (for debug...
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 canonicalise ENSEMBL name; code tidy
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 get xrefs only for dna/peptide; code tidy
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 toString() added (for debugging)
|
commit | commitdiff | tree |
| 2016-01-21 |
gmungoc | JAL-1705 isEmpty() and (debug) toString() methods added
|
commit | commitdiff | tree |
| 2016-01-12 |
gmungoc | JAL-1191 cache isA (great-)grandparents as well for...
|
commit | commitdiff | tree |
| 2016-01-08 |
gmungoc | JAL-1705 DbSourceProxy properties converted to methods...
|
commit | commitdiff | tree |
| 2016-01-05 |
gmungoc | JAL-653 updating 'align as' tests to match latest tweaks...
|
commit | commitdiff | tree |
| 2016-01-05 |
gmungoc | Merge remote-tracking branch 'origin/features/JAL-1705_ensem...
|
commit | commitdiff | tree |
| 2016-01-05 |
gmungoc | JAL-653 typed map for feature colours in method signature
|
commit | commitdiff | tree |
| 2016-01-05 |
gmungoc | JAL-1191 check for obsolete term when descriptions...
|
commit | commitdiff | tree |
| 2015-12-23 |
gmungoc | JAL-1191 unzipped OBO file removed
|
commit | commitdiff | tree |
| 2015-12-23 |
gmungoc | JAL-1191 zipped SO OBO file added to /resources, more...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1191 more test cases
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1191 and provide the SO OBO file in /resources :-)
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1191 SequenceOntology wrapping/caching SO.OBO via...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1191 stub class for a SequenceOntology wrapper
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1551 don't autoformat /* comments */
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-1421 parameterised map constructor used
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 encapsulate Strand, Attributes, Status of SequenceFe...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 realise virtual mappings and align when adding...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-391 new Calculate options to Reverse, Reverse Complement...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame collections changed from...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 set showSequenceFeatures=true on loading a...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 GFF new/refactored helper classes
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 AlignedCodonFrame internal refactor, merge...
|
commit | commitdiff | tree |
| 2015-12-22 |
gmungoc | JAL-653 hold AlignedCodonFrame collections as list...
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-653 code tidy / tests for 'realise gff mappings'
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-653 handle reverse strand mapping in SearchResults...
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-653 mappings always reside on the dataset alignment...
|
commit | commitdiff | tree |
| 2015-12-03 |
gmungoc | JAL-653 handle reverse strand mappings also
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-1421 generics loop syntax; 'bug?' comment added
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-653 test for 'resolving GFF mappings to sequences...
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-653 small comment change only
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-652 refactored to remove one method
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-653 (experimental) 'realise' dummy sequences in...
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-1980 check for null alignment; JAL-1551 @Override...
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-653 (experimental) methods to resolve dummy to...
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-1270 constructor test added
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-653 getStrand javadoc/refactor/test
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-1421 use generics JAL-1551 @Override annotations...
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-1270 constructor tests added, compiler warnings...
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-652 further refactoring / tests
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-652 correct case for test file name
|
commit | commitdiff | tree |
| 2015-11-30 |
gmungoc | JAL-653 MapList constructor merges any contiguous ranges
|
commit | commitdiff | tree |
| 2015-11-23 |
gmungoc | JAL-653 Gff tests moved back in to FeaturesFileTest
|
commit | commitdiff | tree |
| 2015-11-22 |
gmungoc | JAL-653 test for 'groups file' and mixed Jalview/GFF
|
commit | commitdiff | tree |
| 2015-11-21 |
gmungoc | JAL-1968 remove feature links
|
commit | commitdiff | tree |
| 2015-11-21 |
gmungoc | JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
|
commit | commitdiff | tree |
| 2015-11-17 |
gmungoc | JAL-1961 update link to GFF2 spec
|
commit | commitdiff | tree |
| 2015-11-09 |
gmungoc | JAL-1705 type enum can encapsulate the corresponding...
|
commit | commitdiff | tree |
| 2015-10-08 |
gmungoc | JAL-1544 typo fix
|
commit | commitdiff | tree |
| 2015-10-05 |
gmungoc | JAL-1812 set/return currentAlFrame for Groovy in headless...
|
commit | commitdiff | tree |
| 2015-10-05 |
gmungoc | JAL-1684 JAL-1452 new applet parameters defaultColourNuc
|
commit | commitdiff | tree |
| 2015-10-02 |
gmungoc | JAL-1815 restore split frame geometry including horizontal...
|
commit | commitdiff | tree |
| 2015-09-28 |
gmungoc | JAL-1909 repaint complementary alignment panel after...
|
commit | commitdiff | tree |
| 2015-09-25 |
gmungoc | JAL-1859 try hoverDelay of 0.1s in Jmol for more responsive...
|
commit | commitdiff | tree |
| 2015-09-25 |
gmungoc | JAL-1815 restore split frame geometry correctly including...
|
commit | commitdiff | tree |
| 2015-09-24 |
gmungoc | JAL-1905 parse url including & correctly
|
commit | commitdiff | tree |
| 2015-09-24 |
gmungoc | JAL-1904 parse feature file colours on to alignment...
|
commit | commitdiff | tree |
| 2015-09-22 |
gmungoc | JAL-1894 release notes updated
|
commit | commitdiff | tree |
| 2015-09-22 |
gmungoc | JAL-1424 tidied output
|
commit | commitdiff | tree |
| 2015-09-22 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
|
commit | commitdiff | tree |
| 2015-09-22 |
gmungoc | JAL-1859 adding "set hoverDelay 0.001;" to Jmol startup...
|
commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1892 duplicate entry removed
|
commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1799 update height of annotation labels to match...
|
commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1892 Spanish additions for Jalview 2.9
|
commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1152 set initial state of show alignment/sequence...
|
commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1152 small change to match revised annotation sorting...
|
commit | commitdiff | tree |
| 2015-09-21 |
gmungoc | JAL-1619 obsolete help removed
|
commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | JAL-1270 disable test as not really a test and goes...
|
commit | commitdiff | tree |
| 2015-09-18 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
|
commit | commitdiff | tree |
| next |
git://source.jalview.org / jalview.git / search