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JAL-3748 preserve sequence IDs from original alignment view when alignment returned...
2020-09-16 Jim ProcterJAL-3748 preserve sequence IDs from original alignment...
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2020-09-16 Jim ProcterJAL-3748 recover complement alignment from complement...
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2020-09-16 Jim ProcterJAL-3748 make findAlignedSequence require mapped from...
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2020-09-16 Jim ProcterJAL-3748 pass a list to findAlignedSequence to return...
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2020-09-16 Jim ProcterJAL-3700 JAL-3748 use AlignedCodonFrame.covers(seq...
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2020-09-16 Jim ProcterJAL-3700 JAL-3748 AlignedCodonFrame.covers(seq,true...
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2020-09-16 Jim ProcterMerge branch 'failingTest/JAL-3748_reconstructCDSafterProtei...
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2020-09-16 Jim ProcterJAL-3748 store an AlignmentView for the complement...
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2020-09-15 Jim ProcterJAL-3675 logged JAL-3748 as known defect
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2020-09-15 Jim ProcterJAL-3765 JAL-3718 release notes
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2020-09-15 Jim ProcterMerge branch 'patch/JAL-3718_fixed_getdown_patched_for_Relea...
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2020-09-15 Jim ProcterJAL-3675 typo in release notes :(
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2020-09-15 Jim ProcterJAL-3675 update release date and release notes for...
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2020-09-03 Jim ProcterJAL-3675 update release date and release notes for...
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2020-09-03 Jim ProcterMerge branch 'improvement/JAL-3280_Migrate_the_VersionChecke...
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2020-09-03 Jim ProcterJAL-3675 whats new, logging and release notes tidying...
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2020-09-03 Jim ProcterJAL-3676 rework logging docs.
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2020-09-03 Jim ProcterMerge branch 'bug/JAL-3718_Getdown_does_not_autoupdate_corre...
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2020-09-03 Jim ProcterJAL-3676 remove mention of Castor
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2020-09-03 Jim ProcterJAL-3675 tweak release notes for JAL-3667, JAL-3702
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2020-09-03 Jim ProcterJAL-3675 update sequence fetcher service documentation...
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2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key...
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2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
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2020-08-25 Jim Procterreport JAL-3127 as known defect (fix targeted for 2...
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2020-08-25 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
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2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615...
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2020-08-17 Jim ProcterJAL-3675 release notes for JAL-3691
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2020-08-17 Jim ProcterMerge branch 'patch/JAL-3691_No_score_models_available...
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2020-08-17 Jim ProcterJAL-3675 JAL-3561 documented in release notes
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2020-08-17 Jim ProcterJAL-3675 report JAL-3702 as known defect
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2020-08-17 Jim ProcterMerge branch 'patch/JAL-3561_JAL-3660_fileformatexport_CLI...
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2020-08-17 Jim ProcterJAL-3712 fix typos for rebuilding/updating getdown...
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2020-08-17 Jim ProcterJAL-3490 JAL-3675 release notes, update Find dialog...
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2020-08-17 Jim ProcterMerge branch 'patch/Release_2_11_1_Branch_patch_JAL...
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2020-08-17 Jim ProcterJAL-3675 JAL-3597 release notes
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2020-08-17 Jim ProcterMerge branch 'patch/JAL-3597_for_Release_2_11_1_Branch...
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2020-08-13 Jim ProcterJAL-3675 brought forward patch to build.gradle for...
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2020-08-13 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of http...
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2020-08-12 Jim ProcterJAL-3675 added JAL-3576 as known defect (colocated...
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2020-08-11 Jim ProcterJAL-3675 fix issue attribution for JAL-3667 release...
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2020-08-11 Jim ProcterJAL-3675 update release notes for JAL-3673 and tested...
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2020-08-11 Jim ProcterJAL-3673 make sure font metrics are updated if dealing...
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2020-08-11 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into releases...
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2020-08-10 Jim ProcterJAL-3691 toUpperCase(Locale.ROOT) for all standard...
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2020-08-10 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' into...
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2020-08-10 Jim ProcterJAL-3628 JAL-3708 call Cache.initLogger() before using...
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2020-08-05 Jim ProcterJAL-3628 init log after loading testProps for each...
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2020-08-05 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into...
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2020-08-05 Jim ProcterJAL-3675 release notes for JAL-3477, JAL-3667, JAL...
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2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL...
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2020-08-03 Jim ProcterJAL-3675 report JAL-3701 as known defect
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2020-08-03 Jim ProcterJAL-3675 release notes for JAL-3692
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2020-08-03 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into...
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2020-08-03 Jim ProcterJAL-3692 fix up test for 2.11.1 series datamodel API
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2020-07-29 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into releases...
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2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ...
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2020-07-29 Jim ProcterJAL-3675 mention -open argument in the command line...
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2020-07-29 Jim ProcterJAL-3675 JAL-3570 JAL-3608 JAL-2983 release notes and...
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2020-07-28 Jim ProcterJAL-3675 update release note for JAL-2656
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2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzipped...
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2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
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2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints
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2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3615 and JAL-2656
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2020-07-27 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into releases...
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2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3621
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2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3695 JAL-3696 JAL-3697
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2020-07-27 Jim ProcterJAL-3697 show total number of features not shown
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2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to...
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2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,...
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2020-07-04 Jim ProcterMerge branch 'merge/JAL-3609_and_JAL-3608' into releases...
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2020-07-04 Jim ProcterJAL-3675 version update and documentation for JAL-3493...
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2020-07-04 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...
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2020-07-04 Jim ProcterJAL-3638 don’t move cursor to next gap after moving...
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2020-07-04 Jim ProcterJAL-3680 check whether a sequence selection exists...
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2020-07-04 Jim ProcterJAL-3638 shift+arrow keys in cursor mode jumps cursor...
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2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes
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2020-06-29 Jim ProcterMerge branch 'patch/Clear_Highlight_JAL-3493' into...
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2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
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2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column...
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2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into...
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2020-06-16 Jim ProcterMerge branch 'bug/JAL-3561_translatefileformats' into...
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2020-06-16 Jim ProcterJAL-3660 JAL-3561 output alignment as requested file...
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2020-06-16 Jim ProcterJAL-3561 JAL-3660 check resolved FileFormatI instances...
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2020-04-22 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 add GPL license to Jalview source files
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2020-04-21 Jim ProcterJAL-3407 release notes - JAL-247 - for auto-set-ID...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 fix JAL-3574 - remove from known issues for...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3574 JAL-3407 release notes
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2020-04-21 Jim ProcterMerge branch 'bug/JAL-3574filterByPOS' into documentation...
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2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterMerge branch 'documentation/JAL-3407_2.11.1_release...
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2020-04-21 Jim ProcterJAL-3407 add and document ComputePeptideVariants.groovy
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2020-04-21 Jim ProcterMerge branch 'develop' into releases/Release_2_11_1_Branch
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