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Merge branch 'Release_2_8_Branch' into WIP_fix_JAL-1423

2014-01-13	Jalview build Manager	Merge branch 'Release_2_8_Branch' into WIP_fix_JAL...	commit \| commitdiff \| tree
2014-01-13	Jalview build Manager	JAL-1400 sign the applet with manifest attributes for...	commit \| commitdiff \| tree
2014-01-13	Jalview build Manager	JAL-1400 signed applets generally run with all permissions...	commit \| commitdiff \| tree
2013-11-01	Jalview build Manager	JAL-1403 make sure MacOS installer searchers for the...	commit \| commitdiff \| tree
2013-10-23	Jalview build Manager	JAL-1403 updated paths to IA 2013 and additional build...	commit \| commitdiff \| tree
2013-10-23	Jalview build Manager	JAL-1403 upgraded the InstallAnywhere build file to...	commit \| commitdiff \| tree