git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Merge branch 'JAL-1601-direct-jpred4-rest-service' into development/Release_2_12_Branch
2024-03-14 Mateusz WarownyMerge branch 'JAL-1601-direct-jpred4-rest-service'...
commit | commitdiff | tree
2024-03-12 Mateusz WarownyJAL-1601 Update jpred client library.
 commit | commitdiff | tree
2024-03-12 Mateusz WarownyJAL-1601 Read full file before passing to FileParse
 commit | commitdiff | tree
2024-01-25 Mateusz WarownyJAL-1601 fix phmmer client js library
 commit | commitdiff | tree
2024-01-24 Mateusz WarownyJAL-1601 Add jslibs for hmmer and jpred
 commit | commitdiff | tree
2024-01-23 Mateusz WarownyJAL-1601 Fix broken Alignment Annotation test
 commit | commitdiff | tree
2024-01-19 Mateusz WarownyJAL-1601 Patch JPred4 service tests.
 commit | commitdiff | tree
2023-11-06 Mateusz WarownyJAL-1601 Expand secondary structure prediction tests
 commit | commitdiff | tree
2023-11-06 Mateusz WarownyJAL-1601 Change getSubJobs return type
 commit | commitdiff | tree
2023-11-01 Mateusz WarownyMerge branch 'bug/JAL-4313-make-visible-annot-fix'...
commit | commitdiff | tree
2023-11-01 Mateusz WarownyJAL-4313 Clamp start and end ranges to array size
 commit | commitdiff | tree
2023-10-31 Mateusz WarownyJAL-4313 Test and patch annots trimming
 commit | commitdiff | tree
2023-10-30 Mateusz WarownyMerge branch 'bug/JAL-4313-make-visible-annot-fix'...
commit | commitdiff | tree
2023-10-30 Mateusz WarownyJAL-4313 Change default trim end to (length - 1)
 commit | commitdiff | tree
2023-10-30 Mateusz WarownyJAL-4313 Test makeVisibleAnnotations
 commit | commitdiff | tree
2023-10-30 Mateusz WarownyJAL-4313 Create Annotation tests
 commit | commitdiff | tree
2023-10-30 Mateusz WarownyJAL-4313 Patch AnnotationsMatcher to match nulls
 commit | commitdiff | tree
2023-10-30 Mateusz WarownyJAL-4313 Create utilities to test annotations
 commit | commitdiff | tree
2023-10-19 Mateusz WarownyJAL-1601 Implement sec str pred for single sequences
 commit | commitdiff | tree
2023-10-18 Mateusz WarownyJAL-1601 Reuse existing "getNonEmptySequenceSet" method
 commit | commitdiff | tree
2023-10-18 Mateusz WarownyJAL-1601 Rename task class to SecStructPredMsaTask
 commit | commitdiff | tree
2023-10-18 Mateusz WarownyJAL-1601 Move job class as inner task class
 commit | commitdiff | tree
2023-10-17 Mateusz WarownyJAL-1601 Create alignment copying method in AlignmentUtils
 commit | commitdiff | tree
2023-10-17 Mateusz WarownyJAL-1601 Test alignment submitted to service
 commit | commitdiff | tree
2023-10-16 Mateusz WarownyJAL-1601 Propagate hidden columns to the output alignment
 commit | commitdiff | tree
2023-10-16 Mateusz WarownyJAL-1601 Propagate representative sequence to the final...
commit | commitdiff | tree
2023-10-13 Mateusz WarownyJAL-1601 Set job status to server error if collecting...
commit | commitdiff | tree
2023-10-13 Mateusz WarownyJAL-1601 Create SecStructPredTask class
 commit | commitdiff | tree
2023-10-13 Mateusz WarownyJAL-1601 Load and display JPred4 service in AlignFrame
 commit | commitdiff | tree
2023-10-13 Mateusz WarownyJAL-1601 Implement JPred4 WS client and discoverer
 commit | commitdiff | tree
2023-10-05 Mateusz WarownyJAL-1601 Create action and task for sec. str. pred...
commit | commitdiff | tree
2023-10-05 Mateusz WarownyJAL-1601 Implement JPred4 client and discoverer
 commit | commitdiff | tree
2023-10-05 Mateusz WarownyJAL-1601 Update javadoc of getAlignmentAndHiddenColumns
 commit | commitdiff | tree
2023-10-05 Mateusz WarownyJAL-1601 Add sec str pred provider and client interfaces
 commit | commitdiff | tree
2023-09-25 Mateusz WarownyJAL-1601 Test getVisibleCongigMapFor
 commit | commitdiff | tree
2023-09-14 Mateusz WarownyMerge branch 'mmw/bug/JAL-4241-annotation-alignment...
commit | commitdiff | tree
2023-09-14 Mateusz WarownyJAL-4241 Flter empty columns from annotation service...
commit | commitdiff | tree
2023-09-14 Mateusz WarownyJAL-4241 Add SequenceI.setSequence(char[]) method
 commit | commitdiff | tree
2023-09-14 Mateusz WarownyJAL-4241 add SeqsetUtils.filterSequence function
 commit | commitdiff | tree
2023-09-12 Mateusz WarownyJAL-4241 Fix non-standard residues replacement.
 commit | commitdiff | tree
2023-09-11 Mateusz WarownyMerge branch 'mmw/bug/JAL-4241-annotation-alignment...
commit | commitdiff | tree
2023-09-11 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into...
commit | commitdiff | tree
2023-09-11 Mateusz WarownyMerge branch 'improvement/JAL-4245-return-null-from...
commit | commitdiff | tree
2023-09-08 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into...
commit | commitdiff | tree
2023-09-08 Mateusz WarownyJAL-4199 Set all setup methods to alwaysRun
 commit | commitdiff | tree
2023-09-08 Mateusz WarownyJAL-4199 Add tests to the "Functional" group
 commit | commitdiff | tree
2023-08-04 Mateusz WarownyJAL-4241 Test sequences prepared for annotation job
 commit | commitdiff | tree
2023-07-31 Mateusz WarownyJAL-4241 Fix annotation and feature alignment with...
commit | commitdiff | tree
2023-07-28 Mateusz WarownyJAL-4241 Create sequence mapping before adjusting annotations
 commit | commitdiff | tree
2023-07-26 Mateusz WarownyJAL-4245 Test getRootDataset method
 commit | commitdiff | tree
2023-07-26 Mateusz WarownyJAL-4245 Return null from getRootDataset if no dataset
 commit | commitdiff | tree
2023-07-19 Mateusz WarownyJAL-4199 Add tests to the "Functional" group
 commit | commitdiff | tree
2023-07-18 Mateusz WarownyMerge branch 'patch/JAL-4232-disable-unavailable-services...
commit | commitdiff | tree
2023-07-18 Mateusz WarownyMerge branch 'mmw/JAL-4199-task-execution-update' into...
commit | commitdiff | tree
2023-07-18 Mateusz WarownyMerge branch 'mmw/JAL-4199-web-services-testing' into...
commit | commitdiff | tree
2023-07-17 Mateusz WarownyJAL-4232 Disable menu items for RNA services for proteins.
 commit | commitdiff | tree
2023-07-14 Mateusz WarownyMerge branch 'feature/JAL-3954-ebi-phmmer' into mmw...
commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Fix cancel button not appearing on progress bar
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Restore deletable test when removing workers
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Remove viewport reference from AnnotationTask
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Fix slivka client to parse feature fileters
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 remove viewport references from AlignmentTask
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Fix interactive jobs not being stopped
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Organise AlignCalcWorkerAdapter imports
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Implement toString in BaseTask
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Organise annotation task imports and fields
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Set initial delay of task executor to 0
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Remove commented out code
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Perform null check for annotation sequenceRef
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Patch task execution in action tests
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Remove utility methods moved to other classes...
commit | commitdiff | tree
2023-07-12 Mateusz WarownyImplement getRootDatasetSequence for SequenceI
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyImplement getLastGraphGroup in for AnnotatedCollectionI
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Schedule tasks for execution from MenuManager
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Tidy up imports
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Update gui handler for annotation tasks
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Implement AlignCalcWorker adapter for annot...
commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Fix method name typo
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Make all TaskEventListener methods default
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Remove taskRestarted from task events
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Allow multiple listeners in TaskEventSupport
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Change actions to be task factories
 commit | commitdiff | tree
2023-07-12 Mateusz WarownyJAL-4199 Replace AbstractPollingTask with BaseTask
 commit | commitdiff | tree
2023-06-22 Mateusz WarownyJAL-4199 Introduce AlignmentAction tests
 commit | commitdiff | tree
2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED
 commit | commitdiff | tree
2023-06-19 Mateusz WarownyJAL-4199 Test basic service parameter construction
 commit | commitdiff | tree
2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery
 commit | commitdiff | tree
2023-06-14 Mateusz WarownyJAL-4199 Update slivka client
 commit | commitdiff | tree
2023-06-02 Mateusz WarownyJAL-3954 Do not retrieve alignment for failed jobs
 commit | commitdiff | tree
2023-06-02 Mateusz WarownyJAL-3954 Report error log when job fails
 commit | commitdiff | tree
2023-06-02 Mateusz WarownyJAL-3954 Add query sequence aligned to consensus to...
commit | commitdiff | tree
2023-06-02 Mateusz WarownyJAL-3954 reuse spinner dialog to show search task status
 commit | commitdiff | tree
2023-05-30 Mateusz WarownyJAL-3954 create primitive gui handler for search service
 commit | commitdiff | tree
2023-05-16 Mateusz WarownyJAL-3954 Implement phmmer action and task as alignment...
commit | commitdiff | tree
2023-05-16 Mateusz WarownyJAL-3954 Log events TaskEventListener.NULL_LISTENER
 commit | commitdiff | tree
2023-05-10 Mateusz WarownyJAL-3954 Create fallback for handling unknown actions
 commit | commitdiff | tree
2023-05-10 Mateusz WarownyJAL-3954 Register AlignFrame as web service change...
commit | commitdiff | tree
2023-05-10 Mateusz WarownyJAL-3954 Implement job dispatcher service discoverer
 commit | commitdiff | tree
2023-05-10 Mateusz WarownyJAL-3954 Implement NullAction and NullTask for testing...
commit | commitdiff | tree
2023-05-10 Mateusz WarownyJAL-3954 Fix typo in error message
 commit | commitdiff | tree
next