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JAL-1912 added documentation
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc
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2015-10-02 gmungocJAL-1815 restore split frame geometry including horizontal...
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2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after...
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2015-09-25 gmungocJAL-1859 try hoverDelay of 0.1s in Jmol for more responsive...
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2015-09-25 gmungocJAL-1815 restore split frame geometry correctly including...
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2015-09-24 gmungocJAL-1905 parse url including & correctly
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2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment...
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2015-09-22 gmungocJAL-1894 release notes updated
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2015-09-22 gmungocJAL-1424 tidied output
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2015-09-22 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-22 gmungocJAL-1859 adding "set hoverDelay 0.001;" to Jmol startup...
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2015-09-21 gmungocJAL-1892 duplicate entry removed
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2015-09-21 gmungocJAL-1799 update height of annotation labels to match...
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2015-09-21 gmungocJAL-1892 Spanish additions for Jalview 2.9
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2015-09-21 gmungocJAL-1152 set initial state of show alignment/sequence...
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2015-09-21 gmungocJAL-1152 small change to match revised annotation sorting...
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2015-09-21 gmungocJAL-1619 obsolete help removed
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2015-09-18 gmungocJAL-1270 disable test as not really a test and goes...
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2015-09-18 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-18 gmungocJAL-1805 typo corrected
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2015-09-18 gmungocJAL-1788 typos corrected
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2015-09-18 gmungocJAL-1788 broken href fixed
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2015-09-18 gmungocJAL-1859 reinstated full path to file option (for local...
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2015-09-18 gmungocJAL-1424 Ant task to report missing language bundle...
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2015-09-16 gmungocJAL-1882 variable renamed to avoid confusion with member...
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2015-09-16 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus...
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2015-09-16 gmungocJAL-1684 typo correction
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2015-09-16 gmungocJAL-1859 removed temporary test copy of pdb file
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2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils...
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2015-09-16 gmungocJAL-1859 code tidy, remove 'absolute URL' option
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2015-09-16 gmungocJAL-1859 working variable to aid inspection in debugger
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2015-09-16 gmungocJAL-1859 try 1gaq.txt in /lang so it is in the built jar
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2015-09-16 gmungocJAL-1859 debug logging removed
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2015-09-16 gmungocJAL-1859 revert to resolving full path to PDB file
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2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as...
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2015-09-16 gmungocJAL-1859 temporary debug output
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2015-09-15 gmungocJAL-1859 use unresolved PDB filename
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2015-09-15 gmungocJAL-1859 strip file name from applet documentbase
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2015-09-15 gmungocJAL-1859 refactoring / debugging added
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2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort...
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2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match...
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2015-09-14 gmungocJAL-1880 updated mapping tests to ensure they handle...
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2015-09-14 gmungocJAL-1270 test added for separatorListToArray
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2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
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2015-09-14 gmungocJAL-1684 align added alignment to match original in...
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2015-09-14 gmungocJAL-1684 align added alignment to match original in...
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2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame
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2015-09-09 gmungocJAL-857 debug=true for Jmol example diagnosis
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2015-09-09 gmungocJAL-857 added debug output to track down document base...
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2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu...
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2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped...
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2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-08 gmungocJAL-1859 debug output of pdb mappings (mine and SSMs)
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2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar!
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2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-08 gmungocJAL-1859 Jmol applet black background; fix _jvmols...
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2015-09-07 gmungocJAL-1859 Jmol linked applet updated to use Jmol2.js
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2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as...
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2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef...
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2015-09-04 gmungocJAL-1859 jmolFindTarget not JmolFindTarget
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2015-09-04 gmungocJAL-1859 embedded Jmol applet example updated for Jmol...
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2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not...
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2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute...
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2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsing...
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2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-02 gmungocJAL-1544 spelling
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2015-09-02 gmungocJAL-1355 User error text externalised to message bundle
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2015-09-02 gmungocJAL-1768 set initial 'enabled' state for id width label...
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2015-09-02 gmungocJAL-1264 test made i18n robust
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2015-09-02 gmungocJAL-1768 enable fixed width output when auto-width...
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2015-09-02 gmungocJAL-1843 fixed input/add from textbox; added @Override...
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2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-02 gmungocJAL-1619 additions, standardised menu item symbols
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2015-09-02 gmungocJAL-1681 mention of cDNA consensus added
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2015-09-02 gmungocJAL-1673 new test to verify transferRESNUMFeatures()
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2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-09-01 gmungocJAL-1693 split frame opened for get xrefs, translate...
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2015-09-01 gmungocJAL-1672 additional assertions added
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2015-09-01 gmungocJAL-1355 user error message text externalised
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2015-08-28 gmungocJAL-1836 temporary workaround for negative resNumIns...
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2015-08-27 gmungocJAL-1270 comments added regarding required remote service
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2015-08-27 gmungocJAL-1759 updated unit test for removal of trim on Atom...
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2015-08-27 gmungocJAL-1830 tests relocated to AlignViewportTest after...
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2015-08-27 gmungocJAL-1627 updated expected tooltip text in unit test
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2015-08-27 gmungocJAL-1830 unit tests for removing (or not) mappings...
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2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from...
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2015-08-27 gmungocJAL-845 compacting duplicated code
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2015-08-27 gmungocJAL-1611 debug sysout suppressed
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2015-08-27 gmungocJAL-1544 message label corrected
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2015-08-27 gmungocMerge branch 'develop' of https://source.jalview.org...
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2015-08-27 gmungocJAL-1701 help page for Split Frame view linked in
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2015-08-27 gmungocJAL-1544 'Jalview' consistently capitalised
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2015-08-27 gmungocJAL-892 JAL-1764 Varna and Chimera also saved to project...
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2015-08-27 gmungocJAL-892 saved to project; external help link updated
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2015-08-27 gmungocJAL-1727 added EBI mirror of DAS registry
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2015-08-27 gmungocJAL-1596 JAL-1725 JAL-1588 updates for selection in...
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2015-08-27 gmungocMerge branch 'develop' of https://source.jalview.org...
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