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2024-01-23	James Procter	Merge branch 'develop' into features/JAL-34_comparing_msas	commit \| commitdiff \| tree
2024-01-23	James Procter	JAL-4369 invokeAndWait to avoid hang whilst calling...	commit \| commitdiff \| tree
2024-01-23	James Procter	Merge branch 'features/JAL-4366_foldseek_3di_viewing...	commit \| commitdiff \| tree
2024-01-23	James Procter	JAL-4371 minimal test and move PDBEntryUtils to correct...	commit \| commitdiff \| tree
2024-01-23	James Procter	JAL-4369 invokeAndWait to avoid hang whilst calling...	commit \| commitdiff \| tree
2024-01-23	James Procter	JAL-4369 uniprotkb - try to avoid another redirect...	commit \| commitdiff \| tree
2024-01-23	James Procter	JAL-4369 use rest.uniprot.org as fetch domain	commit \| commitdiff \| tree
2024-01-23	James Procter	Merge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on...	commit \| commitdiff \| tree
2024-01-23	James Procter	Merge branch 'bug/JAL-4368_default_colourscheme_applied_to_J...	commit \| commitdiff \| tree
2024-01-18	James Procter	JAL-34 fix up comparison annotation so it gets shown...	commit \| commitdiff \| tree
2024-01-18	James Procter	JAL-34 mouse over ruler in one alignment highlights...	commit \| commitdiff \| tree
2024-01-17	James Procter	JAL-34 - quick hack to see how we can do alignment...	commit \| commitdiff \| tree
2024-01-16	James Procter	JAL-4366 JAL-728 show 3di-Mat based quality in the...	commit \| commitdiff \| tree
2024-01-16	James Procter	JAL-4366 JAL-728 simple hack to use 3di matrix when...	commit \| commitdiff \| tree
2024-01-15	James Procter	JAL-4366 JAL-4371 allow cruft after inferred pdb ids...	commit \| commitdiff \| tree
2024-01-14	James Procter	JAL-4366 JAL-3947 avoid ambiguity for multi character...	commit \| commitdiff \| tree
2024-01-14	James Procter	JAL-4366 JAL-4371 tighten up detection of chain code...	commit \| commitdiff \| tree
2024-01-14	James Procter	JAL-4366 revive broken alignDNAasDNA test	commit \| commitdiff \| tree
2024-01-14	James Procter	JAL-4366 JAL-4371 fix imports	commit \| commitdiff \| tree
2024-01-14	James Procter	JAL-4366 avoid corrupting map when no complete mapping...	commit \| commitdiff \| tree
2024-01-14	James Procter	JAL-4366 JAL-4371 refactor and fix up code inferring...	commit \| commitdiff \| tree
2024-01-12	James Procter	JAL-4366 provide options for updating (or not) the...	commit \| commitdiff \| tree
2024-01-12	James Procter	JAL-4366 fixed wrinkles in reconstructing peptide alignment...	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-4366 fix reconstruction of peptide alignment...	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-4366 test reconstruction of peptide alignment given...	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-4366 use dataset sequences for building the mapping	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-4371 make the PDB fetcher use simple naming 1xyzA...	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-3466 higher ‘crummy alignment’ threshold when deciding...	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-4366 remove some tortuous repetition in computeMapping...	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-4366 incomplete test verifying a 3di alignment...	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-4366 new mapping type for 3di/protein sequence...	commit \| commitdiff \| tree
2024-01-11	James Procter	JAL-4366 allow a 3di alignment to be loaded and shown...	commit \| commitdiff \| tree
2023-12-17	James Procter	JAL-4366 account for 3dmat matrix in tests	commit \| commitdiff \| tree
2023-12-16	James Procter	JAL-4366 1:1 mapping requires exact sequence length...	commit \| commitdiff \| tree
2023-12-16	James Procter	JAL-789 pairwise alignment via calculations dialog...	commit \| commitdiff \| tree
2023-12-16	James Procter	JAL-4366 mat3di score model	commit \| commitdiff \| tree
2023-12-15	James Procter	JAL-4366 hacked in a 1:1 mapping	commit \| commitdiff \| tree
2023-12-15	James Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2023-12-15	James Procter	JAL-4366 build a mapping to a PDBChain with an arbitrary...	commit \| commitdiff \| tree
2023-12-15	James Procter	JAL-4366 compute coverage on each side of the pairwise...	commit \| commitdiff \| tree
2023-12-14	James Procter	JAL-4356 update release notes	commit \| commitdiff \| tree
2023-12-14	James Procter	Merge branch 'bug/JAL-4353_cannot_output_multiple_different_...	commit \| commitdiff \| tree
2023-12-14	James Procter	Merge branch 'bug/JAL-4353_cannot_output_multiple_different_...	commit \| commitdiff \| tree
2023-12-14	James Procter	JAL-4353 wait for files to be written fully before...	commit \| commitdiff \| tree
2023-12-14	James Procter	JAL-4217 singleThread all tests	commit \| commitdiff \| tree
2023-12-14	James Procter	Merge branch 'bug/JAL-2934proportionalScrolling' into...	commit \| commitdiff \| tree
2023-12-14	James Procter	Merge branch 'develop' into bug/JAL-2934proportionalScrolling	commit \| commitdiff \| tree
2023-12-12	James Procter	JAL-4217 don’t try and export an image when Jmol is...	commit \| commitdiff \| tree
2023-12-12	James Procter	Merge branch 'develop' into bug/JAL-4353_cannot_output_multi...	commit \| commitdiff \| tree
2023-12-12	James Procter	JAL-4217 close internal frame on the swing thread to...	commit \| commitdiff \| tree
2023-12-12	James Procter	Merge branch 'bug/JAL-4353_cannot_output_multiple_different_...	commit \| commitdiff \| tree
2023-12-12	James Procter	JAL-4353 failing test	commit \| commitdiff \| tree
2023-12-12	James Procter	JAL-4353 fix assert that successive test output files...	commit \| commitdiff \| tree
2023-12-11	James Procter	JAL-4192 more specific info about versions needed	commit \| commitdiff \| tree
2023-12-06	James Procter	JAL-4356 bump RELEASE	commit \| commitdiff \| tree
2023-12-06	James Procter	JAL-4356 new release notes and whats new for 2.11.3...	commit \| commitdiff \| tree
2023-12-06	James Procter	Merge branch 'patch/JAL-840_clustalx_docs_fix' into...	commit \| commitdiff \| tree
2023-12-06	James Procter	Merge branch 'bug/JAL-2934proportionalScrolling' into...	commit \| commitdiff \| tree
2023-11-30	James Procter	JAL-4351 update release notes for JAL-4342	commit \| commitdiff \| tree
2023-11-30	James Procter	Merge branch 'patch/JAL-4342_emptyannotationsexport...	commit \| commitdiff \| tree
2023-11-30	James Procter	JAL-4342 test and patch checking annotation csv export...	commit \| commitdiff \| tree
2023-11-30	James Procter	Patch fixes JAL-4165 - added to release notes JAL-4351	commit \| commitdiff \| tree
2023-11-30	James Procter	JAL-4351 2.11.3.2 scheduled for 1st December release	commit \| commitdiff \| tree
2023-11-30	James Procter	Merge branch 'bug/JAL-4344_structureimage_cl_arg_only_creati...	commit \| commitdiff \| tree
2023-11-22	James Procter	JAL-4343 fix insufficient-caffeine error - add whats...	commit \| commitdiff \| tree
2023-11-22	James Procter	JAL-4343 release today, update notes for JAL-4348 and...	commit \| commitdiff \| tree
2023-11-22	James Procter	Merge branch 'patch/JAL-4345_pae_epas1_doubleclick...	commit \| commitdiff \| tree
2023-11-21	James Procter	JAL-4345 patch and release notes	commit \| commitdiff \| tree
2023-11-20	James Procter	JAL-4343 patch for JAL-4347 uniprot non-pos feature...	commit \| commitdiff \| tree
2023-11-17	James Procter	JAL-4343 release notes for JAL-4340 and JAL-4243	commit \| commitdiff \| tree
2023-11-17	James Procter	JAL-4343 bump version	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4090 JAL-4334 patch in release notes	commit \| commitdiff \| tree
2023-11-15	James Procter	Merge branch 'bug/JAL-4334_unknownstartenduniprotfeatures...	commit \| commitdiff \| tree
2023-11-15	James Procter	Merge branch 'patch/JAL-4222_100s_timeout_on_imagexport...	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4273 actually pass startSeq etc on to rendering...	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4090 fix up release notes new known issues	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4222 bail if we wait too long for Jmol to save...	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4090 blocker patch JAL-3772 tidy up groovy console...	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4090 JAL-4334 position status when start, end or...	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4090 JAL-4338 known defect	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4090 release 15th November 2023	commit \| commitdiff \| tree
2023-11-15	James Procter	JAL-4090 JAL-3858 fix up PAE docs - drop the EBI image...	commit \| commitdiff \| tree
2023-11-13	James Procter	JAL-4090 JAL-1551 source license	commit \| commitdiff \| tree
2023-11-13	James Procter	JAL-4090 relese date 14th Nov 2023	commit \| commitdiff \| tree
2023-11-13	James Procter	JAL-4236 don’t look for headers in JalviewJS	commit \| commitdiff \| tree
2023-11-13	James Procter	JAL-4336 set preferred dimensions for JTextBox workaround...	commit \| commitdiff \| tree
2023-11-13	James Procter	JAL-4090 fix JAL-4236 - just put the name of the class...	commit \| commitdiff \| tree
2023-11-13	James Procter	JAL-4331 construct and pass on overview title before...	commit \| commitdiff \| tree
2023-11-13	James Procter	JAL-4334 failing test using whole of Q29079 accession...	commit \| commitdiff \| tree
2023-11-03	James Procter	JAL-4090 JAL-1551 spotlessApply	commit \| commitdiff \| tree
2023-11-03	James Procter	JAL-4090 tweak what’s new	commit \| commitdiff \| tree
2023-11-02	James Procter	JAL-4090 reported new known issue JAL-4328	commit \| commitdiff \| tree
2023-11-02	James Procter	JAL-4192 minimal specification of gradle version in...	commit \| commitdiff \| tree
2023-11-02	James Procter	JAL-4090 fix up release notes - add notes or JAL-4216...	commit \| commitdiff \| tree
2023-11-02	James Procter	JAL-4169 fix up urls to faq and documentation	commit \| commitdiff \| tree
2023-11-02	James Procter	JAL-4090 known issue report for JAL-4517	commit \| commitdiff \| tree
2023-11-02	James Procter	JAL-4090 release notes for JAL-1713 JAL-2528 and known...	commit \| commitdiff \| tree
2023-11-02	James Procter	JAL-4090 JAL-3921 release notes	commit \| commitdiff \| tree
2023-11-02	James Procter	Merge branch 'patch/JAL-3921_jmol_session_save' into...	commit \| commitdiff \| tree
2023-11-02	James Procter	Merge branch 'develop' into patch/JAL-3921_jmol_session_save	commit \| commitdiff \| tree
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