git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-1617 hack to add a fake xref if the uniprot xref isn't present on the embl entry
2015-03-17 Jim ProcterJAL-1617 hack to add a fake xref if the uniprot xref...
commit | commitdiff | tree
2015-03-17 Jim ProcterJAL-1617 formatting and generics
 commit | commitdiff | tree
2015-03-17 Jim ProcterJAL-1617 fake xref database for when Uniprot xrefs...
commit | commitdiff | tree
2015-03-17 Jim ProcterJAL-1617 toString for DBRefEntry
 commit | commitdiff | tree
2015-03-09 Jim ProcterMerge branch 'features/JAL-1565_jpred4' into develop
 commit | commitdiff | tree
2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to...
commit | commitdiff | tree
2015-03-06 Jim ProcterMerge branch 'features/JAL-845splitPaneMergeDevelop...
commit | commitdiff | tree
2015-03-06 Jim ProcterMerge branch 'develop' into features/JAL-845splitPaneMergeDe...
commit | commitdiff | tree
2015-03-06 Jim ProcterJAL-1683 bump version for r2.8.3 branch
 commit | commitdiff | tree
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
commit | commitdiff | tree
2015-03-06 Jim Procterreassign features already created/documented for 2...
commit | commitdiff | tree
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
commit | commitdiff | tree
2015-03-06 Jim ProcterMerge commit '6797d65989b01c8fa5bdeaf6a66e35279b66a7f7...
commit | commitdiff | tree
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq
 commit | commitdiff | tree
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq
 commit | commitdiff | tree
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath...
commit | commitdiff | tree
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in...
commit | commitdiff | tree
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in...
commit | commitdiff | tree
2015-03-05 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
commit | commitdiff | tree
2015-03-05 Jim ProcterJAL-1643 add quaqua libs as OSX specific resources
 commit | commitdiff | tree
2015-02-27 Jim ProcterMerge branch 'bug/addcustomlaunchdesktopparams' into...
commit | commitdiff | tree
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions...
commit | commitdiff | tree
2015-02-27 Jim Procterfix for JAL-1678
 commit | commitdiff | tree
2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes
 commit | commitdiff | tree
2015-02-12 Jim ProcterJAL-1350 document changed behaviour
 commit | commitdiff | tree
2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test
 commit | commitdiff | tree
2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected...
commit | commitdiff | tree
2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using...
commit | commitdiff | tree
2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup
 commit | commitdiff | tree
2015-02-12 Jim ProcterJAL-1115 typecast
 commit | commitdiff | tree
2015-02-12 Jim Procterjavadoc
 commit | commitdiff | tree
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups...
commit | commitdiff | tree
2015-02-11 Jim ProcterJAL-1655 JAL-845 special support to set column width...
commit | commitdiff | tree
2015-02-11 Jim ProcterJAL-845 avoid OOBException when method is called with...
commit | commitdiff | tree
2015-02-11 Jim ProcterJAL-969 use AlignViewportI interface instance where...
commit | commitdiff | tree
2015-02-11 Jim ProcterJAL-1654 allow font to be specified without modifying...
commit | commitdiff | tree
2015-02-10 Jim Procternote about preserving/reinstating custom grid geometry...
commit | commitdiff | tree
2015-02-10 Jim ProcterJAL-1640 make font-size changes modify grid size again
 commit | commitdiff | tree
2015-02-10 Jim ProcterJAL-845 - portability patch - workaround for lastToken...
commit | commitdiff | tree
2015-02-10 Jim Procteradded comment to @gmungoc todo about referencing PDB...
commit | commitdiff | tree
2015-02-10 Jim ProcterJAL-845 @mungoc TODO comments - addAlignment needs...
commit | commitdiff | tree
2015-02-10 Jim ProcterJAL-1382 slightly more efficient detection of non-gap...
commit | commitdiff | tree
2015-02-10 Jim ProcterJAL-1382 @mungo TODO done: use StringUtils for delete...
commit | commitdiff | tree
2015-02-10 Jim ProcterJAL-966 @mungo TODO complete: List rather than bare...
commit | commitdiff | tree
2015-02-09 Jim ProcterMerge branch 'features/JAL-845splitPaneMergeDevelop...
commit | commitdiff | tree
2015-02-09 Jim ProcterMerge branch 'develop' into JAL-1640_stylesettings
 commit | commitdiff | tree
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
commit | commitdiff | tree
2015-02-06 Jim ProcterJAL-1640 new menu allowing view settings to be transferred...
commit | commitdiff | tree
2015-02-06 Jim ProcterJAL-1640 Desktop.getAlignmentPanel and Desktop.getViewports...
commit | commitdiff | tree
2015-02-06 Jim ProcterJAL-1551 formatting
 commit | commitdiff | tree
2015-02-06 Jim ProcterJAL-1640 more properties moved to style bean and rationalisa...
commit | commitdiff | tree
2015-02-06 Jim ProcterJAL-1551 formatting
 commit | commitdiff | tree
2015-02-06 Jim ProcterJAL-1640 JAL-966 is for boolean getter on AlignViewportI
 commit | commitdiff | tree
2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and...
commit | commitdiff | tree
2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries...
commit | commitdiff | tree
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYLIB...
commit | commitdiff | tree
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number
 commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-1640 setStyle method and associated tests (required...
commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-966 allow access to viewport interface from alignPanel
 commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-1640 getters and setters for viewStyleI - note...
commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-1640 copy constructor test and implementation by...
commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-715 tweaks for SRBS description string parsing
 commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-1161 JAL-1606 note about awt/swing dependency in...
commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-1640 JAL-1551 formatting/imports/remove dead code
 commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-1640 updates to use get/setter on viewportI: efficiencie...
commit | commitdiff | tree
2015-02-02 Jim ProcterJAL-1640 separated style operations into a new ViewStyle...
commit | commitdiff | tree
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the sequence...
commit | commitdiff | tree
2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToRefPDB...
commit | commitdiff | tree
2015-01-27 Jim ProcterJAL-674 JAL-1270 added settings to ensure temperature...
commit | commitdiff | tree
2015-01-23 Jim ProcterMerge branch 'feature_29/JAL-1372_referenceseq' into...
commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1541 changed assert to JUnit assert - test now...
commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1551 formatting
 commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream...
commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1551 crlf changes
 commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
 commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checking...
commit | commitdiff | tree
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referenceseq
 commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer...
commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1551 formatting/imports
 commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1551 source code formatting
 commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity
 commit | commitdiff | tree
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
commit | commitdiff | tree
2015-01-22 Jim ProcterJAL-1372 JAL-1169 documentation for new commands HIDE_INSERT...
commit | commitdiff | tree
2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referenceseq
 commit | commitdiff | tree
2015-01-21 Jim Proctertidy up class files that shouldn't be in repo
 commit | commitdiff | tree
2015-01-20 Jim ProcterJAL-1304 revamped annotation file documentation structure...
commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative...
commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1628 formatting
 commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc
 commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence...
commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
 commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions...
commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in...
commit | commitdiff | tree
2015-01-18 Jim Procteralways use interface rather than field access
 commit | commitdiff | tree
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
 commit | commitdiff | tree
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
commit | commitdiff | tree
2015-01-09 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
 commit | commitdiff | tree
next