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2018-02-10	kjvdheide	JAL-2797 added constructor including embedded/standalone...	commit \| commitdiff \| tree
2018-02-10	kjvdheide	JAL-2797 the big switch, all GUI method calls now go...	commit \| commitdiff \| tree
2018-02-10	kjvdheide	JAL-2797 standalone and embedded implementations of...	commit \| commitdiff \| tree
2018-02-10	kjvdheide	JAL-2797 added adapter for the dummy frame listener	commit \| commitdiff \| tree
2018-02-10	kjvdheide	JAL-2797 added the frame and listener interfaces	commit \| commitdiff \| tree
2018-01-30	kjvdheide	JAL-2797 first attempt	commit \| commitdiff \| tree
2018-01-25	kjvdheide	JAL-2844 removed resetting line drawing to keep line...	commit \| commitdiff \| tree
2018-01-19	kjvdheide	JAL-2844 partitioning code made slightly clearer	commit \| commitdiff \| tree
2018-01-19	kjvdheide	Revert "JAL-2852 added framework for saving as EPS...	commit \| commitdiff \| tree
2018-01-04	kjvdheide	JAL-2871 added inputstream constructor to Configuration	commit \| commitdiff \| tree
2017-12-15	kjvdheide	JAL-1953 JAL-2852 added public "paintFile" method	commit \| commitdiff \| tree
2017-12-15	kjvdheide	JAL-1953 equals and hashCode now takes node ID in account	commit \| commitdiff \| tree
2017-12-12	kjvdheide	JAL-2844 moved line drawing code	commit \| commitdiff \| tree
2017-12-11	kjvdheide	JAL-1953 method made public for interfacing	commit \| commitdiff \| tree
2017-12-08	kjvdheide	JAL-2844 work started on moving the graphical partitioning...	commit \| commitdiff \| tree
2017-12-08	kjvdheide	JAL-2872 Undid inference disabling (done in Jalview...	commit \| commitdiff \| tree
2017-12-05	kjvdheide	JAL-2805 JAL-281 JAL-2847 set tree file made public...	commit \| commitdiff \| tree
2017-12-05	kjvdheide	JAL-2805 JAL-2847 JAL-281 getTreeFile made public	commit \| commitdiff \| tree
2017-11-29	kjvdheide	JAL-2844 colouring subtree method made public	commit \| commitdiff \| tree
2017-11-29	kjvdheide	JAL-2797 added simple check for parent desktop to closing...	commit \| commitdiff \| tree
2017-11-27	kjvdheide	JAL-2853 fix small bug where the font of a not yet...	commit \| commitdiff \| tree
2017-11-27	kjvdheide	JAL-2852 added framework for saving as EPS file	commit \| commitdiff \| tree
2017-11-26	kjvdheide	JAL-2847 needed methods made public	commit \| commitdiff \| tree
2017-11-20	kjvdheide	Merge remote-tracking branch 'forestergit/master' into...	commit \| commitdiff \| tree
2017-11-20	kjvdheide	JAL-2805 added getFilename for Configuration	commit \| commitdiff \| tree
2017-11-20	kjvdheide	JAL-281 added new createApplication with Phylogeny...	commit \| commitdiff \| tree
2017-11-16	kjvdheide	JAL-2805 made needed color set methods public	commit \| commitdiff \| tree
2017-11-13	kjvdheide	JAL-2797 small start on creating either JFrame or JInternalFrame	commit \| commitdiff \| tree
2017-11-13	kjvdheide	JAL-1953 undid commenting out of message panels, should...	commit \| commitdiff \| tree
2017-11-13	kjvdheide	JAL-2796 first (ugly) start on changing Forester's...	commit \| commitdiff \| tree
2017-11-13	kjvdheide	JAL-2805 bunch of needed methods/constants made public	commit \| commitdiff \| tree
2017-11-13	kjvdheide	JAL-2805 Archaeopteryx main returns its created MainFrame...	commit \| commitdiff \| tree
2017-11-08	kjvdheide	Made getters and setters for found nodes public (needed...	commit \| commitdiff \| tree
2017-10-30	kjvdheide	removed unneeded import	commit \| commitdiff \| tree
2017-10-28	kjvdheide	Changed more concrete DistanceMatrix references to...	commit \| commitdiff \| tree
2017-10-28	kjvdheide	Added getValues and write to DistanceMatrix interface...	commit \| commitdiff \| tree
2017-10-28	kjvdheide	Redid changing concrete references to matrixes to interface...	commit \| commitdiff \| tree
2017-10-27	kjvdheide	Merge branch 'JalviewIntegration' of file:////Users...	commit \| commitdiff \| tree
2017-10-26	kjvdheide	Merge branch 'master' of https://github.com/cmzmasek...	commit \| commitdiff \| tree
2017-10-26	kjvdheide	capitalisation	commit \| commitdiff \| tree
2017-10-12	kjvdheide	Inference tab disabled and node frames now appear center...	commit \| commitdiff \| tree
2017-10-12	kjvdheide	disabled Archaeopteryx quit message	commit \| commitdiff \| tree
2017-10-11	kjvdheide	More generic uses of DistanceMatrix instead of concrete...	commit \| commitdiff \| tree
2017-10-11	kjvdheide	Use DistanceMatrix interface instead of the concrete...	commit \| commitdiff \| tree
2017-10-11	kjvdheide	made PhyloInferenceDialog constructor refer to null...	commit \| commitdiff \| tree
2017-10-11	kjvdheide	changed Mainframe from JFrame to JInternalFrame	commit \| commitdiff \| tree

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