jalview.git
2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing
2022-03-23 Jim ProcterJAL-3976 update tests
2022-03-10 Jalview Development... Merge branch 'master' into releases/Release_2_11_2_Branch
2022-03-10 Jalview Development... Merge branch 'develop' into releases/Release_2_11_2_Branch Release_2_11_2_0
2022-03-10 Jalview Development... JAL-3746 bump release date to 10th March - after UoD...
2022-03-10 Jalview Development... JAL-3796 include entitlements when codesigning for...
2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-09 Jalview Development... JAL-3796 commit jni lib in Jmol library that is signed...
2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-09 Jim ProcterJAL-3746 JAL-3841 fix README typo
2022-03-09 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-09 Jim ProcterJAL-3746 more docs tweaking and release notes
2022-03-09 Jim ProcterMerge branch 'spike/try_spotless_JAL-3438' into develop
2022-03-08 Jim ProcterJAL-3746 apply copyright to tests spike/try_spotless_JAL-3438
2022-03-08 Jim ProcterJAL-3746 apply copyright to source
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-03-08 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-08 Jim ProcterJAL-3746 JAL-3841 new README and finalising 2.11.2...
2022-03-08 Jim ProcterJAL-3108 updated Ensembl client and model species names
2022-03-08 Jim ProcterJAL-3746 new release date for 2.11.2
2022-03-08 Jim ProcterJAL-3746 JAL-3103 java.awt.Desktop.showURL method mecha...
2022-03-08 Jim ProcterMerge branch 'bug/JAL-3103_browser_launcher_problems_ma...
2022-03-08 Ben SoaresJAL-3103 updated help doc to remove default browser...
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
2022-03-08 Ben SoaresJAL-3103 add BrowserLauncher2 LGPLv2.1 to THIRDPARTYLIBS
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti...
2022-03-07 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-07 Jim ProcterJAL-3647 release notes for JAL-1842 JAL-3509 JAL-3881...
2022-03-07 Jim ProcterJAL-3685 - two single quotes when replacements are...
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2
2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-04 Jim ProcterJAL-3647 release notes for hdpi/laf scaling JAL-3608...
2022-03-04 Jim ProcterJAL-3746 structure mapping preference docs for JAL...
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab...
2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news...
2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property
2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-04 Jim ProcterJAL-3608 JAL-3830 tweaked the what’s new text and updat...
2022-03-04 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-04 Jim ProcterJAL-3608 JAL-3830 simplified command line docs a bit
2022-03-04 Jim ProcterMerge branch 'doc/JAL-3608+JAL-3830_added_to_help_docs...
2022-03-04 Ben SoaresJAL-3830 added command line to whatsnew and releases
2022-03-04 Ben SoaresJAL-3830 Added new command line usage to docs
2022-03-04 Ben SoaresJAL-3608 added to LaF documentation
2022-03-03 Ben SoaresJAL-3830 fix broken/buggy install4j9 setting of execute...
2022-03-02 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-03-02 Jim ProcterMerge branch 'bug/JAL-3962_awt_dll_problem' into develop
2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3867
2022-03-02 Jim ProcterJAL-3746 release note for JAL-3907 building Jalview...
2022-03-02 Jim ProcterJAL-3746 release note for JAL-3618 Vaqua config so...
2022-03-02 Jim ProcterMerge branch 'benreview/JAL-3691_for_2_11_2_getdownrebu...
2022-03-02 Jim ProcterJAL-3594 release notes and mention jalview develop...
2022-03-02 Jim ProcterRelease notes for JAL—3728 - waiting for ben to sign...
2022-03-02 Jim ProcterJAL-3208 release notes and docs for setprop
2022-03-02 Jim ProcterJAL-3746 release notes and cli arg docs for JAL-3530
2022-03-02 Ben SoaresJAL-3691 bumped the version to 1.8.3-1.2.12 in source... benreview/JAL-3691_for_2_11_2_getdownrebuilds
2022-03-02 Jim ProcterJAL-3746 release notes JAL-3391 JAL-3829 improved 3dbea...
2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3929
2022-03-02 Jim ProcterJAL-3746 more what’s new
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly...
2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to...
2022-03-02 Ben SoaresJAL-3962 Added jre/bin and dist folders to the native...
2022-03-02 Ben SoaresJAL-3130 updated download_jres.sh
2022-03-02 Jim ProcterJAL-3746 what’s new..
2022-03-02 Jim ProcterJAL-3746 release notes for JAL-3202 (JalviewJS)
2022-03-02 Jim ProcterJAL-3746 update release date and release notes/docs...
2022-02-28 Jim ProcterJAL-3746 more what’s new and release notes
2022-02-28 Jim ProcterJAL-3503 2.11.2.0 release notes and docs
2022-02-28 Jim ProcterJAL-3746 JAL-3551 update pymol docs and what’s new...
2022-02-28 Jim ProcterJAL-3746 document -no-annotation cli arg
2022-02-23 Jalview Development... Merge branch 'improvement/JAL-3830_install4j9_macos_set...
2022-02-23 Jalview Development... JAL-3830 temporarily disable the setup screen for OSX...
2022-02-23 Jalview Development... JAL-3796 additional steps for notarization
2022-02-17 Jim ProcterMerge branch 'develop' into improvement/JAL-3830_instal...
2022-02-17 Jim ProcterJAL-3551 patch superpose test for additional undo dis...
2022-02-17 Jim ProcterJAL-3823 JAL-3830 update gradle plugin for install4j...
2022-02-17 Jim ProcterMerge branch 'develop' into improvement/JAL-3830_instal...
2022-02-17 Jim ProcterJAL-3959 add key retrieval urls that support CORS neede...
2022-02-17 Jim ProcterJAL-3746 more release notes and docs: JAL-3863 JAL...
2022-02-17 Jim ProcterJAL-3691 rebuilt getdown jars
2022-02-17 Jim ProcterJAL-3691 patch toUpper/toLower to use Locale.ROOT for...
2022-02-17 Jim ProcterJAL-3691 patch toUpper/toLower to use Locale.ROOT for...
2022-02-16 Jim ProcterJAL-3746 release notes.. in progress
2022-02-16 Jim ProcterJAL-3551 - wrap pair_fit with undo_disable and undo_enable
2022-02-16 Jim ProcterJAL-3837 GPL license on splashscreen (finally !) and...
2022-02-16 Jim ProcterJAL-3949 report Pymol XMLRPC port via log.info
2022-02-16 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-02-15 Jim ProcterJAL-1761 backbone type parameter for configuring which...
2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating...
2022-02-15 Jim ProcterJAL-3551 patch test for altloc handling atom spec in...
2022-02-15 Jim ProcterJAL-1761 need to pass molecule type when generating...
2022-02-15 Jim ProcterJAL-3906 use indicate to highlight current mousedOver...
2022-02-15 Jim ProcterJAL-3746 update release date to later in Feb 2022
2022-02-15 Jim ProcterJAL-3551 pymol documentation
2022-02-14 Jim ProcterMerge branch 'task/r_2_11_2/JAL-3956_alphaFill_authorit...
2022-02-14 Jim ProcterJAL-3551
2022-02-14 Jim ProcterJAL-3956 - PDBEntry objects constructed from 3D-Beacons...
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