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jalview.git
2012-12-07 jprocteruse new secstructure process algorithm commit | commitdiff | tree | snapshot
2012-12-07 jprocterAnne's refined RNAML parser. Seems to have some bugs... commit | commitdiff | tree | snapshot
2012-12-07 jprocterAnne reinstated general stockholm parser code but exten... commit | commitdiff | tree | snapshot
2012-12-07 jproctertyping commit | commitdiff | tree | snapshot
2012-12-07 jprocterconsensus secondary structure algorithm (possibly came... commit | commitdiff | tree | snapshot
2012-12-07 jprocterrevised RNA stem/loop processing code that copes with... commit | commitdiff | tree | snapshot
2012-12-07 jprocterupdate authors for RNA processing routines commit | commitdiff | tree | snapshot
2012-12-07 jproctermenu for choosing between 'protein' and 'RNA' mode... commit | commitdiff | tree | snapshot
2012-12-07 jprocterformatting and error report cleanup commit | commitdiff | tree | snapshot
2012-12-07 jproctergui hooks for contrafold and RNAfold services. commente... commit | commitdiff | tree | snapshot
2012-12-07 jprocterException signature change (will be overwritten by... commit | commitdiff | tree | snapshot
2012-12-07 jprocterformatting commit | commitdiff | tree | snapshot
2012-12-07 jproctertidy import commit | commitdiff | tree | snapshot
2012-12-07 jprocterremove mentions of non-functional RNAInteraction colour... commit | commitdiff | tree | snapshot
2012-12-07 jproctertidy debug messages commit | commitdiff | tree | snapshot
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com... commit | commitdiff | tree | snapshot
2012-12-04 jprocterJAL-1028 tidy and refactor external processing and... commit | commitdiff | tree | snapshot
2012-11-19 jprocterbugfix commit | commitdiff | tree | snapshot
2012-11-18 jprocterJAL-1205 JAL-1140 generalised exception for Anne's... commit | commitdiff | tree | snapshot
2012-11-17 jprocterMerge branch 'develop' into menard commit | commitdiff | tree | snapshot
2012-11-17 jprocterMerge branch 'Release_2_8_Branch' into develop commit | commitdiff | tree | snapshot
2012-11-17 jprocterMerge branch 'master' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2012-11-17 jprocterFileParse adapter for reading directly from inputstreams commit | commitdiff | tree | snapshot
2012-11-17 jprocterreturn alignmentI created from pdbfile class directly... commit | commitdiff | tree | snapshot
2012-11-17 jprocterreturn annotated rna sequences from rnaml returned... commit | commitdiff | tree | snapshot
2012-11-17 jprocterstore chainid on pdbentry commit | commitdiff | tree | snapshot
2012-11-17 jprocterformat adapter should return AlignmentI commit | commitdiff | tree | snapshot
2012-11-17 jprocterformatting commit | commitdiff | tree | snapshot
2012-11-17 jproctercall annotate3d service and parse rnaml to alignment commit | commitdiff | tree | snapshot
2012-11-17 jprocterformatting commit | commitdiff | tree | snapshot
2012-11-17 jproctersequence numbering from 1 commit | commitdiff | tree | snapshot
2012-11-17 jprocterformatting commit | commitdiff | tree | snapshot
2012-11-17 jprocterstore chaincode on pdbentry commit | commitdiff | tree | snapshot
2012-11-17 jprocterformatting commit | commitdiff | tree | snapshot
2012-11-17 jproctersimple HTTP multipart entity poster - may not be useful commit | commitdiff | tree | snapshot
2012-11-17 jproctertests for jalview.analysis.AlignSeq commit | commitdiff | tree | snapshot
2012-11-17 jprocteropenjdk7 returns null for default value selected format... commit | commitdiff | tree | snapshot
2012-11-17 jproctermethod to construct sequence mapping for matching posit... commit | commitdiff | tree | snapshot
2012-11-17 jprocterconvenience method for performing pairwise alignment commit | commitdiff | tree | snapshot
2012-11-17 jprocterformatting and javadoc commit | commitdiff | tree | snapshot
2012-11-15 Paolo Di TommasoFixed T-Coffee file scores parser to support extended... commit | commitdiff | tree | snapshot
2012-11-15 jprocterremove java7 plugin dependency commit | commitdiff | tree | snapshot
2012-11-15 jprocterdon't set background colour for menu bar commit | commitdiff | tree | snapshot
2012-11-15 jprocterallow .rnaml as a filename extension commit | commitdiff | tree | snapshot
2012-11-15 jproctercomment on jalview.io.AlignFile architecture commit | commitdiff | tree | snapshot
2012-11-15 jproctersource formatting commit | commitdiff | tree | snapshot
2012-11-15 jprocterMerge branch 'develop' into menard commit | commitdiff | tree | snapshot
2012-11-13 jprocterMerge branch 'master' into develop commit | commitdiff | tree | snapshot
2012-11-12 jprocterMerge branch 'Release_2_8_Branch' Release_2_8 commit | commitdiff | tree | snapshot
2012-11-12 jprocterfinal tweaks to help landing page commit | commitdiff | tree | snapshot
2012-11-12 jprocterMerge branch 'Release_2_8_Branch' commit | commitdiff | tree | snapshot
2012-11-12 jprocterupdate footer for static page commit | commitdiff | tree | snapshot
2012-11-12 jprocterMerge branch 'Release_2_8_Branch' commit | commitdiff | tree | snapshot
2012-11-12 jproctertidy help commit | commitdiff | tree | snapshot
2012-11-09 jprocterproperty to configure webstart image commit | commitdiff | tree | snapshot
2012-11-09 jproctertweak file association comment and make sure webstart... commit | commitdiff | tree | snapshot
2012-11-09 jprocterpush jalview v2.8 release date to monday 12th November commit | commitdiff | tree | snapshot
2012-11-09 jprocterga tracking, footers and footer link styles commit | commitdiff | tree | snapshot
2012-11-09 jproctermore tweaking of static pages and rejigging applet... commit | commitdiff | tree | snapshot
2012-11-09 jproctertweak whats new again commit | commitdiff | tree | snapshot
2012-11-09 jproctertweaking welcome message and what's new commit | commitdiff | tree | snapshot
2012-11-09 jprocterconstructor takes settings from any existing feature... commit | commitdiff | tree | snapshot
2012-11-08 jprocterJAL-1193 ensure the 'loadedComplete' method gets called... commit | commitdiff | tree | snapshot
2012-11-08 cruisecontrolupdate installAnywhere classpath and libs for jalview 2.8 commit | commitdiff | tree | snapshot
2012-11-08 jprocterupdate release notes for JAL-1202 commit | commitdiff | tree | snapshot
2012-11-08 cruisecontrolJAL-1202 included examples and also added in jdas jars... commit | commitdiff | tree | snapshot
2012-11-08 jprocterremember to close input file! commit | commitdiff | tree | snapshot
2012-11-08 jproctertidy imports commit | commitdiff | tree | snapshot
2012-11-08 jprocterembed links to major features in main page commit | commitdiff | tree | snapshot
2012-11-08 jproctertweak wording commit | commitdiff | tree | snapshot
2012-11-07 jprocterpatch broken link commit | commitdiff | tree | snapshot
2012-11-07 jprocterand more tweaks. commit | commitdiff | tree | snapshot
2012-11-07 jprocterJAL-1201 more layout tweaks commit | commitdiff | tree | snapshot
2012-11-07 jprocterJAL-1201 tweak layout for applet page and allow monospa... commit | commitdiff | tree | snapshot
2012-11-07 jprocterJAL-1201 more tweaks to page layout commit | commitdiff | tree | snapshot
2012-11-07 jprocterJalview 2.8 release notes and whats new! text commit | commitdiff | tree | snapshot
2012-11-07 jprocterupdated release notes for Jalview Version 2.8 commit | commitdiff | tree | snapshot
2012-11-07 jprocterJAL-1201 update pages to use new website design commit | commitdiff | tree | snapshot
2012-11-07 jprocterJAL-957 manual update to applet authorlist - need to... commit | commitdiff | tree | snapshot
2012-10-31 jprocterMerge branch 'Release_2_8_Branch' of https://source... commit | commitdiff | tree | snapshot
2012-10-31 jprocterJAL-1130 fix gif palette (arggh!) commit | commitdiff | tree | snapshot
2012-10-30 cruisecontrolJAL-1197 tweak installer more commit | commitdiff | tree | snapshot
2012-10-30 cruisecontrolJAL-1197 JAL-1198 migrate to IA2012 and new build VM commit | commitdiff | tree | snapshot
2012-10-30 jprocterJAL-1130 JAL-1197 nice installer splashscreens and... commit | commitdiff | tree | snapshot
2012-10-30 jprocterMerge branch 'Release_2_8_Branch' of https://source... commit | commitdiff | tree | snapshot
2012-10-30 jprocterJAL-1130 fireworks editable huge jalview logo in RGB commit | commitdiff | tree | snapshot
2012-10-30 jprocterJAL-1130 JAL-1197 update install anywhere installer... commit | commitdiff | tree | snapshot
2012-10-30 jprocterJAL-1130 JAL-1197 update install anywhere installer... commit | commitdiff | tree | snapshot
2012-10-30 jprocterJAL-1130 updated installAnywhere program logos commit | commitdiff | tree | snapshot
2012-10-30 jprocterJAL-1130 preserved old installAnywhere installer logo... commit | commitdiff | tree | snapshot
2012-10-29 jprocterJAL-1130 made background transparent for small logo... commit | commitdiff | tree | snapshot
2012-10-24 jprocterJAL-1193 call setLoadingFromArchiveFinished(true) for... commit | commitdiff | tree | snapshot
2012-10-24 jprocterJAL-1193 patch prevents JalviewJmolBinding from handlin... commit | commitdiff | tree | snapshot
2012-10-22 jprocterJalview 2.8 Source Header commit | commitdiff | tree | snapshot
2012-10-04 jprocterMerge branch 'develop' into Release_2_8_Branch commit | commitdiff | tree | snapshot
2012-10-04 jprocterJAL-636 switch to simple REST interface to dbfetch... commit | commitdiff | tree | snapshot
2012-10-04 jprocteravoid importing the mapping every time we parse a unipr... commit | commitdiff | tree | snapshot
2012-10-04 jprocterJAL-636 tweak main() based test to allow DAS sources... commit | commitdiff | tree | snapshot
2012-10-04 jprocterJAL-1188 - set the user agent to Jalview Desktop/$... commit | commitdiff | tree | snapshot
2012-10-04 jprocterJAL-1064 JAL-671 make sure all buttons are disabled... commit | commitdiff | tree | snapshot
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