jalview.git
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in...
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open...
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in...
2020-11-12 Ben SoaresJAL-3633 Added Preferences for Proxy Authentication...
2020-11-12 Ben SoaresJAL-3633 label.proxy_server -> label.proxy_servers
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add...
2020-11-12 Ben SoaresJAL-3633 pass getdown proxy settings in proxy.txt on...
2020-11-12 Ben SoaresJAL-3633 ensure check both or https:// for urls
2020-11-12 Ben SoaresJAL-3628 Error when saving alert box has been moved...
2020-11-12 Ben SoaresJAL-3676 More explicit tooltip about resetting log...
2020-11-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
2020-11-10 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error...
2020-11-10 Ben SoaresJAL-3676 improvement for visual selection of console...
2020-11-10 Ben SoaresJAL-3676 code review -- added non-listed Level into...
2020-11-10 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard...
2020-11-10 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to...
2020-11-10 Ben SoaresJAL-3628 Even more Cache.log.debug statements
2020-11-10 Ben SoaresJAL-3628 More Cache.log.debug statements
2020-11-06 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF...
2020-11-06 Ben SoaresJAL-3628 Changed all file1.renameTo(file2) calls to...
2020-11-06 Ben SoaresJAL-3609 formatting save after cherry-picks
2020-11-06 Ben SoaresJAL-3609 Allow pass-through of setHiDPIScale property...
2020-11-06 Ben SoaresJAL-3609 Report when scale setting used.
2020-11-06 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI....
2020-11-06 soaresJAL-3609 corrected maxdimension to mindimension. Adjust...
2020-11-06 Ben SoaresJAL-3609 removed debugging prints
2020-11-06 Ben SoaresJAL-3609 changed property names to something more palat...
2020-11-06 Ben SoaresJAL-3609 system properties to force a scale, or automat...
2020-11-06 Ben SoaresJAL-3609 Added a -DforceHiDPISetting=true option mainly...
2020-11-05 Ben SoaresJAL-3608 cherry pick of 92cb745e7
2020-10-29 Ben SoaresJAL-3248 Added mention of version 'TEST' in shadow...
2020-10-29 Ben SoaresJAL-3248 Fixed path typos in building.md/html and corre...
2020-10-28 Jim ProcterJAL-3760 fix tests for changed behaviour
2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per...
2020-10-28 Jim ProcterMerge branch 'portforward/JAL-3765_patch_to_2112' into...
2020-10-28 Jim ProcterJAL-3765 fix test
2020-10-28 Jim Procterfix for JAL-3765
2020-10-28 Ben SoaresJAL-3248 Added step to create the eclipse files before...
2020-10-15 Ben SoaresMerge branch 'develop' into blocker/JAL-3611_space_char...
2020-09-28 Ben SoaresJAL-3753 ensure correct dependencies for shadowJar...
2020-09-28 Ben SoaresMerge branch 'develop' into bug/JAL-3753_resources_dupl...
2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle...
2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findPrope...
2020-09-23 Ben SoaresMerge branch 'develop' into bug/JAL-3753_resources_dupl...
2020-09-23 Ben SoaresJAL-3477 Added 10k leeway to amount of memory reserved...
2020-09-23 Ben SoaresJAL-3753 Resources seen in tests and appropriate filter...
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop...
2020-09-20 Ben SoaresJAL-3753 put resources in gradle run and test path
2020-09-18 Ben SoaresJAL-3753 JAL-3754 first rejig
2020-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2020-09-14 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when...
2020-09-14 Ben SoaresJAL-3718 force re-initialise of getdown.txt file when...
2020-09-14 Ben SoaresMerge branch 'feature/JAL-3615gzipXfam' into develop
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in...
2020-09-11 Ben SoaresJAL-3679 Added externally specified plugins dir to...
2020-09-10 Jim ProcterJAL-3746 bump release version for 2.11.2 series (curren...
2020-09-10 gmungocJAL-3518 removed unneeded override in ChimeraCommands
2020-09-04 Ben SoaresJAL-3679 Added externally specified plugins dir to... feature/JAL-3615gzipXfam
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to...
2020-09-03 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2020-08-31 Jim ProcterJAL-3680 merged description of individual cursor key...
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor...
2020-08-31 gmungocJAL-3018 Ensembl reviewed REST version updated to 13.0
2020-08-31 gmungocJAL-1191 use Cache.log for logging
2020-08-31 gmungocJAL-1191 reduce logging level for warnings
2020-08-24 gmungocJAL-3018 updated reviewed REST version to 12.0
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored...
2020-08-17 Jim ProcterJAL-3490 don't init the combo box's history cache for...
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop
2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop
2020-08-13 Ben SoaresJAL-3597 Increased heap passmark to <= 45MB and report...
2020-08-12 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests...
2020-08-09 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to...
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-08-03 Ben SoaresJAL-3477 added help documentation for executable jar...
2020-08-03 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into develop
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ...
2020-07-28 Jim ProcterMerge branch 'feature/JAL-3615gzipXfam' into develop
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe...
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to...
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,...
2020-07-20 gmungocJAL-3597 slight tidying of code and Javadoc, passmark...
2020-07-14 gmungocJAL-1421 last change tidied up properly
2020-07-14 gmungocJAL-1421 types added to nameHash and nodeHash maps
2020-07-14 gmungocJAL-3597 additional references nulled, bug in test...
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-07-07 gmungocJAL-1424 streamlined message checker, corrected applet...
2020-07-06 gmungocJAL-1424 slight tidying of reporting
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message...
2020-07-06 gmungocJAL-3518 Spanish text for 'write features'
2020-07-06 gmungocJAL-3570 JAL-3187 spanish translations for tabbed featu...
2020-07-06 gmungocJAL-3570 updated external help links
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