jalview.git
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2014-01-29 Jim ProcterJAL-1432 AUTHORS file and updated authors properties...
2014-01-29 Jim ProcterJAL-1432 update dependency and licensing info
2014-01-29 Jim ProcterJAL-1432 bump version
2014-01-29 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch Release_2_8_Branch
2014-01-29 Jim ProcterJAL-1400 added explanation about signed/unsigned applet...
2014-01-29 Jim ProcterJAL-970 JAL-1400 fixed layout
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
2014-01-28 Jim ProcterJAL-957 reinstate the PDBfile parameter
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
2014-01-28 Jim ProcterJAL-1400 sign the jnlp for arbitrary memory
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
2014-01-28 Jim ProcterJAL-957 JAL-1400 only sign specific jar artefacts for...
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
2014-01-28 Jim ProcterJAL-957 neater boilerplate link to signed/unsigned...
2014-01-28 Jim ProcterJAL-957 shorten title for linked applets example
2014-01-28 Jim ProcterJAL-957 removed cruft on appletParameters page
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
2014-01-28 Jim ProcterJAL-957 make a copy of the applet/Jmol applet jars...
2014-01-28 Jim ProcterMerge branch 'JAL-1400_sandboxapp' into JAL-957_jbake
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch
2014-01-28 Jim ProcterJAL-957 permissions property for example pages (jbake...
2014-01-28 Jim ProcterJAL-957 unsigned applet demo pages created with jbake
2014-01-28 Jim ProcterJAL-957 tidier source and ensure permissions is explici...
2014-01-28 Jim ProcterJAL-957 new jbake-generated example pages
2014-01-28 Jim ProcterJAL-957 instructions on runnning Jbake to regenerate...
2014-01-28 Jim ProcterJAL-957 standardise formatting for example preamble
2014-01-28 Jim ProcterJAL-957 standard link to signed/unsigned demo pages...
2014-01-28 Jim ProcterJAL-957 tidy jbake directory
2014-01-27 Jim ProcterMerge branch 'JAL-1430_mfa_ext' into Release_2_8_Branch
2014-01-27 Jim ProcterJAL-1430 mfa added as a known extension for FASTA files
2014-01-21 jprocterMerge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch
2014-01-21 jprocterJAL-957 JAL-1400 unsigned applet examples
2014-01-21 jprocterJAL-957 JAL-1400 use signed/unsigned applet as needed
2014-01-21 jprocterJAL-957 JAL-1400 JAL-1407 signed and unsigned jalviewAp...
2014-01-21 jprocterJAL-957 tidy up formatting
2014-01-21 jprocterJAL-957 javascript api documentation page
2014-01-21 jprocterJAL-957 macro-ise the sidebar generation loop and add...
2014-01-21 jprocterJAL-957 only include content body for 'normal' pages...
2014-01-21 jprocterJAL-957 fix layout of pages
2014-01-18 jprocterformatting
2014-01-18 jprocterJAL-1400 numeric version numbers only for minimum jre...
2014-01-17 jprocterMerge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch
2014-01-17 jprocterJAL-1400 still fixing JmolApplet manifest issue
2014-01-17 jprocterMerge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch
2014-01-17 jprocterJAL-1400 tweaking to ensure JmolApplet build correctly
2014-01-17 jprocterMerge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch
2014-01-17 jprocterformatting
2014-01-17 jprocterJAL-1400 default JalviewLite build is signed applet...
2014-01-17 Jim ProcterJAL-957 first attempt to build examples with jbake
2014-01-14 Jim ProcterMerge branch 'WIP_fix_JAL-1423' into Release_2_8_Branch
2014-01-14 Jim ProcterJAL-1400 specify minimum 1.6 JRE
2014-01-13 Jalview build... Merge branch 'Release_2_8_Branch' into WIP_fix_JAL... WIP_fix_JAL-1423
2014-01-13 Jalview build... JAL-1400 sign the applet with manifest attributes for...
2014-01-13 Jalview build... JAL-1400 signed applets generally run with all permissi...
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into Release_2_8_Branch
2014-01-13 Jim ProcterJAL-1422 update any existing configuration to replace...
2014-01-13 Jim ProcterJAL-1422 change default link to EMBL-EBI Search
2014-01-13 Jim ProcterJAL-1422 remove SRS and expasy links and replace with...
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into Release_2_8_Branch
2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handlin...
2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
2013-11-26 Jim ProcterJAL-1400 update manifest in the JmolApplet jar
2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
2013-11-26 Jim ProcterJAL-1400 disable 'Permissions' in manifest to see if...
2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
2013-11-26 Jim Proctersandbox permissions
2013-11-26 Jim Procternew required parameter for deploying the applet
2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
2013-11-26 Jim ProcterJAL-1400 add codebase and caller allowable codebase
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
2013-11-25 Jim ProcterJAL-1139 specified SHA1WithRSA for sig algorithm and...
2013-11-25 Jim Procteradivce from ant.apache.org/manual/Tasks/signjar.html re
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
2013-11-25 Jim ProcterJAL-1139 need to explicitly specify SHA1 for java 6...
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
2013-11-25 Jim ProcterJAL-1139 supress dependency warnings from proguard
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
2013-11-25 Jim ProcterJAL-1139 latest version of proguard needed for Java...
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_Branch
2013-11-07 Jim ProcterJAL-1286 additional tests to ensure that non-GZ files...
2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens...
2013-11-07 Jim ProcterJAL-1286 test input of gzip stream from local file
2013-11-05 Jim ProcterJAL-1400 found a fix for the sandbox exception - need...
2013-11-05 Jim Procterexperiment with reinstating the sandbox permissions
2013-11-05 Jim ProcterJAL-1400 try putting explicit domain for jalviewLite...
2013-11-05 Jim ProcterJAL-1400 Always create indices for jar before signing
2013-11-05 Jim ProcterJAL-1400 sign everything !
2013-11-05 Jim ProcterJAL-1400 explicit security settings for applet
2013-11-05 Jim ProcterJAL-1400 explicit security permissions for Desktop
2013-11-01 Jalview build... JAL-1403 make sure MacOS installer searchers for the...
2013-10-23 Jalview build... JAL-1403 updated paths to IA 2013 and additional build...
2013-10-23 Jalview build... JAL-1403 upgraded the InstallAnywhere build file to...
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea...
2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start...
2013-10-11 Jim ProcterJAL-1114 javadoc
2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable field...
2013-10-11 Jim ProcterJAL-1114 API javadoc
2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences...
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